Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10776 ATGGGGTTTCCCATTTTTGTTCTTCAACTCATCACTTTTTCAGTTCTTGCTATAGCTCAAGAAGAACCTAAAGGGAACCCCAAAGATAATAGTGAAGCCCAGGATAAACAACCTTCAAGTAATAAAAACAACTCCAATCTTTTACTATTAATTCTCAATGTGGTTCTTCTTTTCGCAATTATATTGCTATTGATTCTTTACTACAACACTTCAAAGAAACTCAATAGAATAATGAAAGGACACATTAACAACATGTCTTATGAGCAAGAGAAAGATGTTGAGACAAGCATTGAGAAGAGGATTGAGATAGGAGAAGGAACAACAATGATGACAGTGGAAGAGAGAAAGGAACTTATGTTCTTTAATGATGAGACAAAGTTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGACAAGGAATTATGGGGAATAGTTATAAGGCTATGTTGAGTAATGGACCTAACATTGTTGTTAAGAGGTTAAGGGACTTAAAACCATTCACTAAGGAGGAGTTTGCTAAGATGGTGAAAATGATTTCTGATCTTAGACATCCTAACTTGTTGCCTTTGCTTGCTTACTACCATTCAAGAGATGAGAAGCTTATTCTCTATAAATATGCACAGAATGGAAATCTTTTCTCCAAACTTCATGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGAGTGGCTAGAGCACTAGAGTACCTTCACCTCAACAACAAGATCCATAACATAGTCCCTCATGGAAATTTGAAGTCATCAAATGTACTATTTGATGAAAACAATTCAATTCTTGTATCTGACTTTAGCCTTTCCTCCTTGATAGCACAACCAATTGCAGCTCAACACATGGTTGTTTACAAATCACCTGAATATGGTTATGCCAGAAAAGTTACAATACAATCAGATGTTTGGAGCTATGGATCACTCTTAATAGAAATCCTAACGGGGAAAGTTTCTCTCTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACTGCTGAGATATTCGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGCTGTTGCAGATAGCGATGAGATGCATCGAGAGGTTTCCAGAGAAACGCCCCGAAATGAAAGAGGTGGTTAGAGAAGTCGAGAAAATACAACAGATACACTTGATGTCTGAAGATGACGAAGATGCTTCTTGTGATAGGTCTCTAACCGATGATTCCTTTTCAACTAGTAACTCAGGGATTTTTATTGGAGATGAAAGATAG 1338 0.3789 MGFPIFVLQLITFSVLAIAQEEPKGNPKDNSEAQDKQPSSNKNNSNLLLLILNVVLLFAIILLLILYYNTSKKLNRIMKGHINNMSYEQEKDVETSIEKRIEIGEGTTMMTVEERKELMFFNDETKFQMGELLRASAEALGQGIMGNSYKAMLSNGPNIVVKRLRDLKPFTKEEFAKMVKMISDLRHPNLLPLLAYYHSRDEKLILYKYAQNGNLFSKLHDGRDGNRVPFNWNSRLSVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENNSILVSDFSLSSLIAQPIAAQHMVVYKSPEYGYARKVTIQSDVWSYGSLLIEILTGKVSLCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQIHLMSEDDEDASCDRSLTDDSFSTSNSGIFIGDER 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10776 445 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 40 410 IPR046959 -
Vifa1g10776 445 SUPERFAMILY Protein kinase-like (PK-like) 138 412 IPR011009 -
Vifa1g10776 445 ProSiteProfiles Protein kinase domain profile. 134 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10776 445 MobiDBLite consensus disorder prediction 427 445 - -
Vifa1g10776 445 MobiDBLite consensus disorder prediction 421 445 - -
Vifa1g10776 445 Pfam Protein tyrosine and serine/threonine kinase 138 404 IPR001245 GO:0004672|GO:0006468
Vifa1g10776 445 Gene3D Transferase(Phosphotransferase) domain 1 210 431 - -
Vifa1g10776 445 Gene3D Phosphorylase Kinase; domain 1 102 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10776 Vifa-Chr1 1812415106 1812416960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10776 113 438 Receptor kinase-like Gene Family AT4G31250 41.284 2.22e-75 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g10776 PK_Tyr_Ser-Thr 6.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10776 - - mtr:11421603 743.806