Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10770 ATGGCGGAGGAAAGTGGACAAGAAATCAATGGCGGATTCTCGATGGACTCAACCGAATCACGCTGGGTTTTCCACGAAGATGACGAAGACGAAGATGTTTCTGATATTGAAGAATACGACGCCGATTTCAGGTTGAGAGGACGCACTACTGTGGTGGATTCCGAAGACGAGGATAACCTTGAACAAAAGCTTATACGTACTGGTCCGAGAATCGATTCGTTCGATGTGGAGGCTCTTGATGTTCCCGGTGCTCCCAGAAATGATTATGAGGACATCAGTGTAGGAAAGAAAATTGTATTGGCTTTTCAGACTCTTGGTGTTGTCTTTGGTGATGTCGGAACAAGTCCATTGTATACATTCAGTGTTATGTTCAGAAAGGCCCCTATAAATGAAAATGAAGACATTCTTGGAGCATTATCACTTGTCTTGTATACTTTAATCTTGATTCCCTTGCTGAAATATGTCCTGGTTGTTCTGTGGGCCAATGATAATGGAGAAGGTGGTACTTTTGCGTTATACTCCTTGATTTGTCGTCATGCTAAGGTGAGTCTTCTCCCCAATCAGTTGGCATCAGATGCTCGTATATCAAGTTTTAGGCTAAAGGTGCCATCCCCTGAGCTTGAAAGGTCATTAAAAATCAAGGATAGACTTGAGGGTTCTCTAACTCTAAAGAAGACTCTGCTGATAATAGTGCTTGCTGGTACTTCTATGGTGATTGCTAATGGTGTTGTAACACCAGCAATGTCAGTATTGTCATCTGTCGGTGGTTTAAAAGTTGGGATAGATGCAATCAAGCAAGATGAAGTGGTAATGATTTCAGTTGCCTGCCTGATTGTTTTGTTCAGTGTACAAAAGTTTGGAACAAGTAAAGTGGGACTTGCAGTTGGACCTGCTTTGTTCATATGGTTTTGCTCTCTTGCGGGTATTGGGATATACAATCTTGTCAAATATGACAGAAGTGTCTTGAGGGCATTTAATCCTATTCATATATATTATTTCTTCAAGAGGAACTCAACTAAAGCATGGTATTCTCTTGGGGGCTGTCTTTTGTGTGCAACTGGTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTGCGATCAGTGCAGCTTACATTTATCTTTCTTGTTTTGCCGTGCCTGATATTGGGTTATTTGGGTCAAGCTGCATACCTTATGGAAAACCATGCTGATGCTGGTCAGGTCTTTTATTCATGTGTTCCGAGTGGTGCATTCTGGCCAACTTTCCTTATTGCTAACATTGCGGCACTTATTGCAAGCCGGGCTATGACAACAGCAACATTTTCATGTATAAAGCAATCAACTGCACTTGGTTGTTTCCCTCGTCTTAAAATCATTCACACCTCCCGGAAATTTATGGGCCAGATCTATATCCCTGTCCTAAACTGGTTTCTCCTGGCTATGTCGCTTGTGCTTGTCTGCTCTATATCCAGCATTGATGAAATTGGAAATGCCTATGGAATTGCTGAGCTGGGGGTGATGACGACGACCACTGTTTTACTAACCGTTGTTATGCTTCTTATATGGCAAATACACATTATCATAGTGTTGTGTTTCGCAGTAGTCTTCTTGGGATTGGAGTTGACTTTCTTTTCATCTGTTCTGTGGAGTGTGGCAGATGGAAGTTGGATAATTTTGGTCTTTTCTGTAATAATGTTTCTTATAATGTATGTATGGAATTATGGAAGCAATCTCAAGTATGAAACTGAAGTCAAGCAAAAACTGTCGATGGATTTGATGCGTGAATTAGGGTCTAACCTTGGGACAATACGTGCTCCTGGAATTGGTTTGCTTTATAATGAATTGGTCAAAGGAATACCAGCAATTCTTGGACATTTTCTGACTACACTTCCGGCAATTCACTCCATGATCATATTTGTGAGTATCAAATATGTTCCGGTTCCTGTGGTGCCTCAGAGTGAAAGGTTCCTTTTCAGGCGAGTCTGCCTCAAAAGTTACCATATATTTCGTTGTATTGCCAGATATGGTTATAAAGATGTTCGAAAAGAAAATCACCAGACTTTTGAGCAGATGCTGATTGAGAGCCTAGAGAAATTTATACGCCGTGAGGCTCAGGAGAGATCACTAGAAAGTGATAGGGATGAAGATGTTGATTCAGAGGATGAGTACTCTAGCTCTAGAGTTCTAATTGCTCCCAATGGTAGTGTTTACTCGCTCGGGGTTCCTCTTCTTGCTGGTTTTAAGGATACAAGCAACACCTCTGTTATAGAAGCAAGCACATCAGAGGTGTTAAGCCGCACAACCTCTGAATCCTCGGTGTTTGATGCCGAGCAGAGCCTTGAGAGGGAGTTATCTTTTATTCACAAGGCTAAAGAATCTGGAGTTGTTTATCTTCTCGGTCATGGAGATATAAGAGCAAGGAAGGACTCTTGGTTTATCAAGAAGTTAGTAATAAACTATTTCTACGCCTTCTTGAGAAAGAACTGCAGGAGGGGGATCACAACTTTAAGTGTGCCTCATTCTCATCTGATGCAAGTTAGCATGACTTACATGGTTTGA 2544 0.4151 MAEESGQEINGGFSMDSTESRWVFHEDDEDEDVSDIEEYDADFRLRGRTTVVDSEDEDNLEQKLIRTGPRIDSFDVEALDVPGAPRNDYEDISVGKKIVLAFQTLGVVFGDVGTSPLYTFSVMFRKAPINENEDILGALSLVLYTLILIPLLKYVLVVLWANDNGEGGTFALYSLICRHAKVSLLPNQLASDARISSFRLKVPSPELERSLKIKDRLEGSLTLKKTLLIIVLAGTSMVIANGVVTPAMSVLSSVGGLKVGIDAIKQDEVVMISVACLIVLFSVQKFGTSKVGLAVGPALFIWFCSLAGIGIYNLVKYDRSVLRAFNPIHIYYFFKRNSTKAWYSLGGCLLCATGSEAMFADLCYFSVRSVQLTFIFLVLPCLILGYLGQAAYLMENHADAGQVFYSCVPSGAFWPTFLIANIAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFLLAMSLVLVCSISSIDEIGNAYGIAELGVMTTTTVLLTVVMLLIWQIHIIIVLCFAVVFLGLELTFFSSVLWSVADGSWIILVFSVIMFLIMYVWNYGSNLKYETEVKQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPAILGHFLTTLPAIHSMIIFVSIKYVPVPVVPQSERFLFRRVCLKSYHIFRCIARYGYKDVRKENHQTFEQMLIESLEKFIRREAQERSLESDRDEDVDSEDEYSSSRVLIAPNGSVYSLGVPLLAGFKDTSNTSVIEASTSEVLSRTTSESSVFDAEQSLERELSFIHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRRGITTLSVPHSHLMQVSMTYMV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10770 847 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 96 845 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g10770 847 Pfam K+ potassium transporter 101 674 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g10770 847 NCBIfam potassium uptake protein 100 846 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10770 Vifa-Chr1 1811697833 1811704275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10770 1 847 Inorganic Solute Cotransporters AT5G09400 76.763 0.0 1311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10770 - - gmx:100788190 1437.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10770 1 1811697833 1811704275 Vifa1g10770 1 1811697833 1811704275 ECH
Vifa1g10770 1 1811697833 1811704275 Vifa1g10770 1 1811697833 1811704275 PCT