Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10769 ATGTCATCTTACTTTTCTTCTTCGTTTCTTGTAATCCAAATTCCAACAGCAACAACGGTTTCTGCTGTGAAGCAGATGGCGCTTTTCAAACCTCTCAATCTGAATTTTCGAAACGGCAGATGCATCCAACGGCAGTTGAATCACCGTGCTCGCTGCCACAGCTCTGTTAAGCCATTGCGGTTACGGTGCTCAACTCCTTCCAGTGGCGGGAACCACCTCCATGATGATGCTATTGTTCTCCATGTTCGGGGAATGATGTGTGAGGGATGTGCATCCAGCGTCAAGAAAATTCTAGAAACTCAACCACAAGTGTTATCTGCTACTGTGAATCTAGCATCAGAGACAGCACTGGTTTCACCTTTATTATCTCAAGATAAAACTCCACCAAATTGGCAAAAGCAGCTAGGAGAAACACTTGCACACCATTTAACTACATGTGGTTTTACTACTACCCTTAAAGGTTAG 465 0.4409 MSSYFSSSFLVIQIPTATTVSAVKQMALFKPLNLNFRNGRCIQRQLNHRARCHSSVKPLRLRCSTPSSGGNHLHDDAIVLHVRGMMCEGCASSVKKILETQPQVLSATVNLASETALVSPLLSQDKTPPNWQKQLGETLAHHLTTCGFTTTLKG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10769 154 ProSiteProfiles Heavy-metal-associated domain profile. 76 144 IPR006121 GO:0046872
Vifa1g10769 154 Pfam Heavy-metal-associated domain 80 121 IPR006121 GO:0046872
Vifa1g10769 154 Gene3D - 76 153 - -
Vifa1g10769 154 CDD HMA 79 151 IPR006121 GO:0046872
Vifa1g10769 154 SUPERFAMILY HMA, heavy metal-associated domain 78 120 IPR036163 GO:0046872
Vifa1g10769 154 FunFam Copper-transporting ATPase PAA1, chloroplastic 76 152 - -
Vifa1g10769 154 ProSitePatterns Heavy-metal-associated domain. 82 111 IPR017969 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10769 Vifa-Chr1 1811643599 1811645363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10769 76 151 Primary Pumps ATPases AT4G33520 63.158 9.64e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10769 - K17686 mtr:11435142 175.637