Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10764 ATGGCGGAGCGTTCTTCATACGAATTGGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTACGACCTGCAGAAATTTGTGAAATTCTTCGTAACTATCGGATGTTTCATATCACATCAGAACCTCATATAAGGCCACCGAGCGGTTCACTTTTTCTTTTTGACCGGAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTAAAAGAAGCTCATGAAAAATTAAAGGTGGGAAGTGTTGATGTGTTACATTGTTACTACGCACATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTATTGGATGCTTGAACAGGATACACACATAGTATTTGTCCACTACTTGGAAGTTAAGGGTAACAAGTCAAATACGGGAGGAAACGCTGATAGCGATGGGGTCATATCAGATTCTCAAAAGGTCAATTCTCCGTCGTCTGGCTTTCCTACAAGTTATAGTAGTGTGCCTTCACTGAGTACAGATTCCATGAGCCCAACTAGCAGCATGACATCTTTACGTGAAGATGCCGATTCAGGTGATCATGGACAGTCATCAGTTTCTGGAACGGAATATATCCCACATTTTGATAGGGATAAATTTCGGGGAAATGATGCTACTGGTATTGATGGCCTAAAAGCACATGGCCTAGCTTCATGGGACACAGTCTTGCATGCTGATCCTTCTCTTGTATCATTTCCTTCCATCCCATCTAGTTCACTGGCAAACATGCTTGACCCAGAACATAACATCTTGGGTGACTTTTCAATGAACAGAAGTGGTCTCACTATTGGAGCAGGGAGCTCTCAGCCTCTCCAATCAAATTGGCAGATTCCTTTTGATGACAACACAGGACACATGCCAACCTACATGCCAACCTTTACCCAATCATTGAGTTTGGAATTTGAATCTGATTATGGAACTGGTTTACTAGGGAATGAAGATCGTAATGAAAGTTCTGAAATTGATCCTGTCATGTTTGGTTTTCACGGTGAGCCAAAAGAGAAGCTTGCACAGCGAAACTATCTGGAAGAAAAGGTAGACGAACAACAGCAAGATGACCTCAAGTCCAATTCTACAGGTGAAGTTCCTAGCGAAGAAACTATTAGCTATCCCTTATCTGCGAGGCGCACATTATTGGATAGGGATGAGAGCTTGAGGAAAGTTGATAGTTTCAATCGATGGATTACTAAAGCACTTGGCGAGGTGGATAATTTGAATATGCAATCCTCAAGTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGATAGATGATACCTCACTGAGCCCATCGCTGTCTCAGGACCAACTATATAGCATAAATGATTTTTCACCTAAATGGGCTTGTGCTGAGTCAGATATTGAGGTGTTGATTATTGGATCGTTTTTGAAAAGTCAATCAGACGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTGTAGCTAATGGAATTCTGTGCTGTAAAGCTCCTCCTCATAAGGTTGGCCGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGCGAAGTGCGTGAATTTGATTTCAGAGAGGGCTATTCTAGAAATGTAGATTATACCGAGTTTTTCAACAGCTCGGCTGGCATGATACTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAAAACCAGCGCACACTTTAAATCAAACCTTTGAGGGCGGTGTGGAGAAAATGAACTTAATTCCTAAGCTTATTTCACTAAGAGAGGAAGAAGAATATTCAAGTAAGGAAGAGCAGTCTCTGTTTCACAGGCAGGTTAAAGAGAAACTGTACTCGTGGCTGCTTCATAAGGTTACTGAGAGTGGTAAAGGGCCAAATGTGTTAGATAAGGATGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGGTTATGACTGGGCAATAACCCCAATTTTAACTGCTGGAGTTAGTATCAACTTTCGTGATGTGAATGGATGGACAGCTTTGCATTGGGCGGCATCTTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTATCCATGGGTGCCGATTGTGGAGCATTAACAGATCCGTCTCCAGAATTTCCTTCAGGTAGAACAGCTGCAGATCTCGCCTCTAGCAATGGGCACAAAGGACTCTCTGGTTTTCTAGCGGAGTCTTCATTAACAAGCCACCTTGAAACCCTCACAGTGGATGATCAACAAAAAGGTGGTAAGCAAGAAGTTCCAGGAATGAAAACAGTACAGACAGTTTTGGAGCGAAGTGCAACACCTGTGGTCTATAATGATATGCCTGATGCTCTCTGTCTTAAGGATTCTCTAACTGCTGTCCGCAATGCTACACAAGCTGCCGATCGCATACATCAAGTATTCAGAATGCAGTCCTTTCAGAGGAAGCAGTTAACTCAGAATGAGGATGATGAGTTTGGTTTGTTAGATCAGCAGGCTCTTTCCCTACTAACTTCTAAGTCGAGCAAATCAGGACAAGGAGATGGTTTATTCAATACCGCTGCAACTCAAATACAGAAGAAGTTTCGTGGTTGGAAGAAGAGGAAAGAGTTCTTGATCATTCGGCAAAGAATTGTTAAAATCCAGGTTCAGTGA 2661 0.4258 MAERSSYELGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDTHIVFVHYLEVKGNKSNTGGNADSDGVISDSQKVNSPSSGFPTSYSSVPSLSTDSMSPTSSMTSLREDADSGDHGQSSVSGTEYIPHFDRDKFRGNDATGIDGLKAHGLASWDTVLHADPSLVSFPSIPSSSLANMLDPEHNILGDFSMNRSGLTIGAGSSQPLQSNWQIPFDDNTGHMPTYMPTFTQSLSLEFESDYGTGLLGNEDRNESSEIDPVMFGFHGEPKEKLAQRNYLEEKVDEQQQDDLKSNSTGEVPSEETISYPLSARRTLLDRDESLRKVDSFNRWITKALGEVDNLNMQSSSGISWSTDECGHVIDDTSLSPSLSQDQLYSINDFSPKWACAESDIEVLIIGSFLKSQSDVTTCNWSCMFGEVEVPAEVVANGILCCKAPPHKVGRVPFYVTCSNRLACSEVREFDFREGYSRNVDYTEFFNSSAGMILHLRLEEFLSLKPAHTLNQTFEGGVEKMNLIPKLISLREEEEYSSKEEQSLFHRQVKEKLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLGYDWAITPILTAGVSINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPEFPSGRTAADLASSNGHKGLSGFLAESSLTSHLETLTVDDQQKGGKQEVPGMKTVQTVLERSATPVVYNDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQNEDDEFGLLDQQALSLLTSKSSKSGQGDGLFNTAATQIQKKFRGWKKRKEFLIIRQRIVKIQVQ 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10764 886 Gene3D Immunoglobulins 450 546 IPR013783 -
Vifa1g10764 886 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 884 - -
Vifa1g10764 886 ProSiteProfiles Ankyrin repeat region circular profile. 677 703 - -
Vifa1g10764 886 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Vifa1g10764 886 FunFam Calmodulin-binding transcription activator 2 450 546 - -
Vifa1g10764 886 Gene3D - 853 885 - -
Vifa1g10764 886 MobiDBLite consensus disorder prediction 361 383 - -
Vifa1g10764 886 SMART ANK_2a 716 745 IPR002110 GO:0005515
Vifa1g10764 886 SMART ANK_2a 677 706 IPR002110 GO:0005515
Vifa1g10764 886 SMART ANK_2a 644 673 IPR002110 GO:0005515
Vifa1g10764 886 MobiDBLite consensus disorder prediction 143 212 - -
Vifa1g10764 886 SUPERFAMILY E set domains 457 542 IPR014756 -
Vifa1g10764 886 ProSiteProfiles CG-1 DNA-binding domain profile. 15 140 IPR005559 GO:0003677
Vifa1g10764 886 Pfam IPT/TIG domain 457 531 IPR002909 -
Vifa1g10764 886 ProSiteProfiles IQ motif profile. 854 882 IPR000048 GO:0005515
Vifa1g10764 886 Pfam Ankyrin repeats (3 copies) 623 705 IPR002110 GO:0005515
Vifa1g10764 886 SMART CG_1_2 18 135 IPR005559 GO:0003677
Vifa1g10764 886 MobiDBLite consensus disorder prediction 143 189 - -
Vifa1g10764 886 Gene3D - 601 748 IPR036770 -
Vifa1g10764 886 Pfam CG-1 domain 21 133 IPR005559 GO:0003677
Vifa1g10764 886 SUPERFAMILY Ankyrin repeat 616 738 IPR036770 -
Vifa1g10764 886 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10764 Vifa-Chr1 1811261023 1811268130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10764 1 886 CAMTA Transcription Factor Family AT5G64220 50.105 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa1g10764 CG-1 9.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10764 K21596 - gmx:100818124 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10763 1 1811254447 1811255139 Vifa1g10764 1 1811261023 1811268130 PCT