Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10762 ATGGATACTCTTTGTTGCTTCAACTCTGTTAGTAAGGCTGTTGGATCATGTAGCTCTGGCAAAGGCAAGAGCAATCAGTACCCACTTAAGTATGGTTTTTGCTTAGTTGAAGGGAAACCAGATCACCCAATGGAGGACTTTCACGTAGCGAAAATCGTACAGTTCCATGGGCGAGAGTTAGGACTTTTCGCCATATTTGATGGACACTCGGGAGATACCGTTCCTGCCTATTTACAAAAACATCTCTTTGCAAATATCTTGAAGGAAGAAGACTTCTGGACCGATCCTAACAGTTCGATCATTGAAGCTTATGAGTCAACGGATCAGGCCATTCTTTCTCACAGTCCTGACTTGGGGCGAGGAGGATCGACTGCAGTGACTGCCATTCTTATAAACAATCAGAAGTTATGGATAGCAAACGTTGGAGATTCGCGAGCAGTTCTGTCGAGGAAAGGGGCCGCTATACAGATGAGCATTGATCACGAGCCCAATACTGAAAGACGCATAATCGAGAATAAAGGCGGCTTTGTTTCAAACCTTCCAGGAGATGTTGCGAGAGTGAATGGACAGCTTGCAGTTTCTCGAGCATTCGGAGACAGAAACCTGAAGTCACACTTGCGATCTGATCCAGACGTACAACCCGACGATATCGATCAAGATACTGAGCTCTTGATACTTGCTAGTGACGGCCTATGGAAGGTAATGGCGAACCAAGAAGCAGTTGATATTGCAATAAAGATAAAAGATCCACAAAAAGCAGCTAAACATTTAACTGCAGAGGCATTGAAAAGAGAGAGTAGGGATGATATTTCATGCATTGTAGTTCGTTTCAAGTGA 837 0.4409 MDTLCCFNSVSKAVGSCSSGKGKSNQYPLKYGFCLVEGKPDHPMEDFHVAKIVQFHGRELGLFAIFDGHSGDTVPAYLQKHLFANILKEEDFWTDPNSSIIEAYESTDQAILSHSPDLGRGGSTAVTAILINNQKLWIANVGDSRAVLSRKGAAIQMSIDHEPNTERRIIENKGGFVSNLPGDVARVNGQLAVSRAFGDRNLKSHLRSDPDVQPDDIDQDTELLILASDGLWKVMANQEAVDIAIKIKDPQKAAKHLTAEALKRESRDDISCIVVRFK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10762 278 CDD PP2Cc 31 277 IPR001932 -
Vifa1g10762 278 SMART PP2C_4 22 275 IPR001932 -
Vifa1g10762 278 Gene3D - 10 278 IPR036457 -
Vifa1g10762 278 FunFam Probable protein phosphatase 2C 39 21 278 - -
Vifa1g10762 278 Pfam Protein phosphatase 2C 42 270 IPR001932 -
Vifa1g10762 278 PANTHER PROTEIN PHOSPHATASE 25 277 IPR015655 GO:0004722|GO:0006470
Vifa1g10762 278 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Vifa1g10762 278 SUPERFAMILY PP2C-like 25 278 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10762 Vifa-Chr1 1811124223 1811125735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10762 1 278 PP2C-type Phosphatase Gene Family AT1G22280 66.899 9.28e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10762 K17506 - jre:109003252 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10762 1 1811124223 1811125735 Vifa1g10762 1 1811124223 1811125735 ECH
Vifa1g10762 1 1811124223 1811125735 Vifa1g10762 1 1811124223 1811125735 PCT