Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10752 ATGAAGAAGGAAGAAGAATCAACGGTGAAGATGGAGTGGTTATCTTCCATTGATTCAACCACTCTCTCACATTCTGAACTTCACGCGCTTTCTCTCTCTTCACTCTCTTCTTTCGATCTAAAATCCACGCGCGAAATCATCACTCCCAAAATCGATCCCTCCACCTTCAACCACAGCGCCGGTTCCCACCGTCAAACCTACTCCCGTCCTCGCCGTCTATGTCGCGTCGCACCGCTTCTTCCTACTCCCGCTCTCCCCGCCGACCACCGCGTCATCGTCGATTACCTCAAGCAGTTTATCAGAGAGGATCCGAAGTTCGACACGGTGGAGCTTCTTCCGCCGACAGTTCCTTCGCCGCCGGTTATGATGTTTAGCGGTGGAGTGTTTAGCGGTGAAGTGAGGATGAGGAAGAGAGGGAGGAAACCTAAAGTGAAGATGCATTTGGATGAGAGAGGGATGGGGGTTGTGAATAAGAACGGCGTTGCTATTGATCTTGCTGCGTTGTTTAATGTGGAGCATCCGTTTGCGGCGGAGCTGGCGAGACGGACGGAGGGGATGAATAGTGAGGAAGAGCTGTTAGGGTTTTTGAGTGATTTGGTTGGGCAATGGGGAAGTAGGAGGAGGAAGAGGAGGATCGTTGATGCGGCTGATTTTGGAGACGTGTTGCCTCTTGATTGGAAGCTTCTTCTTAGTTTGAAGAGAAAAGATGGTCGTGCTTGGATCTATTGCCGCAGATATATAAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTGCTATTTGCAGTCTCGCGTTGGCCCCTCTGATTTACAGTTGCAAATCAGTCACAAGAGTGAAAACATACTTCAGGAACAGAGAGTTACTACTGATAATTCTGCAGGTGTTGCTCGCGAGGAGAATGATCAACGGCAGATTGTTGCCACTAACTCAGATGTGTCTGGTTTGTCTGTCTCTAATGAACGATTGAAAGAAGTGTCCTTGTTGGAGACGGAGAACCTTGCAGATGTGCAAATACATGATCTGTTTGAATGTCACAAGTGCAGCATGACCTTTGATGAGAAGGATGGGTATTTGCAGCACCTGTTGTCTATTCATCAAAGGACAACGAAACGGTATCGAGTTGGTGCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAATTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAGGCGTCGCTACAATAGTCATGTTGGGATACATGTAAGGAATTATGTGAGGAGAGCTGAAAATTTGCCAAGCCAGCCTAATGTCCCGAGTGCAGACAAGTCTCCAGTGACGGATGAGATGCCCTCTAGGATCTCCAAGATGGATGCCCTCGTCGAGATTGCTCAAAACTCTATTATGGAGGATTCTGTCATGGAACCAGATTGTTCTTCTAAACTAAATATGATTCCTGTTTCAGAAATTGCGGTTGGTGACTTAGATGAAAACATAAAAGTTGAGTCTCCGATTAATGATCAACAAATGGAAGAGAGCTTGATTGGCACAAATGTAGTTCACAATCCAAATCAGCAAGGTAGTCCTCGTTTATTCATGGATGGAACAGTAGAGAAGATTGACTACAATAACAAAGTTATTGATGCAAATATGTTTAGCTTTCAAGATAACTTGGGCTTGTTATCTGTAAATAAGAAAAATGTTGATGCACCTGATACTTCTAAAGGAAAAGGTGATGTTCTGCTGACTGTTGAGGGGTTTGATCATTCTGGGATTAATCTGCAAGGAGTTTCTCAAAGCCTGCTGTTTCCTTCATCTGGTAATCACATGAAACCTGAGAAGAGTGAAAGTTCTAGTTGTACCAATACCCAAGGGGATCTTCAACTTGATGAAGACAATAGTAATAAGAGTGACTTGAAAATTGGTTTAGATGGCTGCAAGGATGCACCTGGTGTTGCTAATGTTCAAGTGACAGCAATTCCAACTTCTAAAGAAGATATGGTCCAATCTAGAGTTTCTAACACCTCTGTATCCCCAGAACAATCTTTGTATTCGTTTTCTGCATTCAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATAGGTTCTCTCGAGTATGATTTTGCAAGTGTTCAAGGCTCTCTTGATGTGTCAGCTGAATTAGCAAATCACCTTGTGGTGCAAGGGACATGTGCATCCTCGGCTCAGTCTGCATCACAAGAAGTTATGTTAAATGTGGATGACAATAATCTACTAACAACCCCATGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCTGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATATGTTGGACAGCGGTTCACCACATGCTGGCCATCTTTAG 2403 0.4386 MKKEEESTVKMEWLSSIDSTTLSHSELHALSLSSLSSFDLKSTREIITPKIDPSTFNHSAGSHRQTYSRPRRLCRVAPLLPTPALPADHRVIVDYLKQFIREDPKFDTVELLPPTVPSPPVMMFSGGVFSGEVRMRKRGRKPKVKMHLDERGMGVVNKNGVAIDLAALFNVEHPFAAELARRTEGMNSEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLDWKLLLSLKRKDGRAWIYCRRYISPSGQQFVSCKEVSCYLQSRVGPSDLQLQISHKSENILQEQRVTTDNSAGVAREENDQRQIVATNSDVSGLSVSNERLKEVSLLETENLADVQIHDLFECHKCSMTFDEKDGYLQHLLSIHQRTTKRYRVGASVSDGVIIKDGKFECQFCHKVFLERRRYNSHVGIHVRNYVRRAENLPSQPNVPSADKSPVTDEMPSRISKMDALVEIAQNSIMEDSVMEPDCSSKLNMIPVSEIAVGDLDENIKVESPINDQQMEESLIGTNVVHNPNQQGSPRLFMDGTVEKIDYNNKVIDANMFSFQDNLGLLSVNKKNVDAPDTSKGKGDVLLTVEGFDHSGINLQGVSQSLLFPSSGNHMKPEKSESSSCTNTQGDLQLDEDNSNKSDLKIGLDGCKDAPGVANVQVTAIPTSKEDMVQSRVSNTSVSPEQSLYSFSAFSSDKGFQELRLEDIGSLEYDFASVQGSLDVSAELANHLVVQGTCASSAQSASQEVMLNVDDNNLLTTPCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINMLDSGSPHAGHL 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10752 800 ProSitePatterns Zinc finger C2H2 type domain signature. 394 414 IPR013087 -
Vifa1g10752 800 ProSiteProfiles Zinc finger C2H2 type domain profile. 345 373 IPR013087 -
Vifa1g10752 800 MobiDBLite consensus disorder prediction 596 627 - -
Vifa1g10752 800 ProSitePatterns Zinc finger C2H2 type domain signature. 347 368 IPR013087 -
Vifa1g10752 800 Gene3D Classic Zinc Finger 319 419 - -
Vifa1g10752 800 Pfam Methyl-CpG binding domain 221 268 IPR001739 GO:0003677
Vifa1g10752 800 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 2 612 IPR037472 -
Vifa1g10752 800 SMART c2h2final6 392 414 IPR013087 -
Vifa1g10752 800 SMART c2h2final6 345 368 IPR013087 -
Vifa1g10752 800 SUPERFAMILY DNA-binding domain 218 271 IPR016177 GO:0003677
Vifa1g10752 800 MobiDBLite consensus disorder prediction 596 623 - -
Vifa1g10752 800 ProSiteProfiles Zinc finger C2H2 type domain profile. 392 419 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10752 Vifa-Chr1 1809375692 1809379509 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g10752 MBD 2.6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10752 - - gmx:100526917 884.789