Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10748 ATGAACACCACCGATCCAGAATACTGGAAGAAATTGATGGTCAATTATCTCTTCCGCGACCATTCCGTCGAACAACTCCGCTCCATCGCTTCTTCTCCCGATTCTCATCTTCATTTTCCTCTCTACATCGACTTCGCAGAGTTAATGGATTATGATCCCCGCATCGCTCATCTAATCTTTTCCCAATCCAATACCTACCTTCAGCTATTCGATGACGCCGCTCTTTTGGCTCATAGATTTGTGTTAGAAGAAATGGCTGCTGATGAAAAGAATAATGTGGTTGAGAAAAAATTCGTTCATGTTCGGATTAATGTTGGCGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGGCGTGTTCGGGTGCAGCACCGAGGGATTCTACTCACTGTCAAAGGGATTGTAATCAGGTCTGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTACATGTGCCATAAATGCAAAAACAGCTTCACAATTCATCCTGAGGTGGAAGCAAGAAACTCTATATCATTACCTTCAATGTGCCCATTTCAGAAGCCAAAGCCCTGTGGTGGTTCCAAATTCCAGTATGTAGAGAATACTATTGTGTGCCATGATTATCAGGAGATAAAAGTACAAGAAAGTACTCAAGTGCTAGGTGTTGGAGCAATTCCTCGTTCAATTCTCGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACCGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCCGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGTCATGGTTATGAAATTCGAGCAGTTTTGGAATCAATTCAAAGATGCACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAGATATTTGGTCTTTTCACTGTCAAGCTAGCGGTTGCACTAACACTGATCGGAGGTGTGCAACACGTCGATGCTTCTGGAACACGGGTAAGGGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGAAAATCACAGTTTCTGAAATTTGCTGCAAAGTTGAGCAACCGATCTGTTATTACAACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCCGTGAAAGATGGGGGTGAGTGGATGTTGGAAGCCGGGGCCCTTGTCTTGGCTGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGCACCAAAACAACAGTATTTGGCGCCACAAATCCTAAGGGACATTATGATCCTGACCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTGTTAAGCAGGTTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCTGAACCAGATAGAACATCCAATGATGAAGATCTAGCAAATATCTGGCCTCTTTCTACTCTTAAGAGGTATGTACACTATTTAAAAGAAAAATTCAGACCAGTCCTTACGAGAGAGGCCGAAGCAGTTATATCCAGCTATTATCAACTTCAAAGGAGATCTGCCACAGATAATGCGGCTAGAACAACTGTCCGCATGCTTGAAAGTTTGATTCGCCTAGCTCAGGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGCATAGAATCTTCCATGACCACCTCAGCTATTGTGGATTGCATTGGGAACGCCCTGCATTCCAATTTCAAGGACAACCCAGATCAGGAATACGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAAAGACAACTTTTCTGATATGAATATCATTGAAGACTGA 1998 0.4354 MNTTDPEYWKKLMVNYLFRDHSVEQLRSIASSPDSHLHFPLYIDFAELMDYDPRIAHLIFSQSNTYLQLFDDAALLAHRFVLEEMAADEKNNVVEKKFVHVRINVGGSPLECPETFPSIGRVRVQHRGILLTVKGIVIRSGAIKMHEGERKYMCHKCKNSFTIHPEVEARNSISLPSMCPFQKPKPCGGSKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDVMVMKFEQFWNQFKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTSNDEDLANIWPLSTLKRYVHYLKEKFRPVLTREAEAVISSYYQLQRRSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFKDNPDQEYAKQERLILEKLGCKDNFSDMNIIED 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10748 665 Pfam MCM AAA-lid domain 533 614 IPR041562 -
Vifa1g10748 665 Gene3D - 122 250 IPR012340 -
Vifa1g10748 665 Gene3D - 146 202 - -
Vifa1g10748 665 Pfam MCM P-loop domain 309 512 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 Gene3D - 282 620 IPR027417 -
Vifa1g10748 665 FunFam Probable DNA helicase MCM9 285 619 - -
Vifa1g10748 665 SMART AAA_5 349 498 IPR003593 GO:0016887
Vifa1g10748 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 624 IPR027417 -
Vifa1g10748 665 SUPERFAMILY Nucleic acid-binding proteins 38 257 IPR012340 -
Vifa1g10748 665 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 35 638 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 406 420 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 348 363 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 484 492 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 SMART mcm 115 616 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa1g10748 665 CDD MCM9 310 614 - -
Vifa1g10748 665 Pfam MCM OB domain 122 250 IPR033762 -
Vifa1g10748 665 ProSiteProfiles MCM family domain profile. 307 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10748 Vifa-Chr1 1808456492 1808471478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10748 13 639 Core DNA Replication Machinery Family AT2G14050 74.841 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10748 K10738 - gmx:100776255 1109.75