Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10734 ATGGACGGAACCAACAGAGGAGAAGCGGAACGGTGGCTCTACACAGCTAACAAGCTCCTCAGCGCGCGTGACCTACACGGCGCACGCTCATTCGCCATCAGAGCACGTGAATCCGACCCCAGATTCGAAGCCACCGAGCTTCTCTTAGCGGTTATCGACACTCTCTTAGCCGGTGAAGTTCAGATCAAAGAACATCTCGATTACTACGCCATTCTTCAAACTCTTCGTTACACTCAGAACATTGAGTACATCGCCGTTCAGTTCCGCCGTCTCGCCGTTCTCCTCGACCCTCACCGGAATCCGTTTGCTTTTGCAGCTCATGCTTTTTCTCTTGTTCATGATGCTTGGTCCATTTTCTCAAGCCCGCATAAGAAAGCTTTGTATGATGAACAGCTTCATTTTCTTACTCAACCACCGCCACCACAACCACAACCTATTCAACCACCGCCACCGCCACCACAACCACAACCTATTCAACCTTCTCCTCCTTCAGTTCAGGTCAATCACAATCATGACCTCCAACATAGGAACAACCCTAACGTGATTGCCGAGGAACAAAACAACAACGGGCCGAGGCGTAGTCTGAGTAATATCGACCGGCCGACTAGGCCATGTCAGAGCAATGTCGACAAGCCGACTGAGCCTAAGCCCGTTGACTCAGAAGTTGGAAGCTTCTGGACGGCGTGTCCTTACTGTTATGCAATGTTTGAGTATCCTAATGTTTATCAGGAGTGTACACTCCGGTGTCAGAATTGTAGGAAAGGGTTTCATGCGGTGGTGGTACGCTCTCCGCCAGAGTTGGCTGAAGACGGTAGTTTGTTTTGTAGCTTTGGGTATATCCCTTTAGGGTTTAGTGGGGATTTTAAGGATATTAGTGGGTCATCTTCGGAATGGAACCCTGTTTCGACTTTGTTTCCTTGTACTATGAAAGGTGCTTCTTCCAAGAGGGGTGCTCCGAGAGGGCCTGTTGTTTATCATGATCATGATACATGTGTGGCTTTCGCAGAGCTTTCTGAAGAAACTGAAGATGATACCGATGATGATGATTGGTGGAGAGGGGATGATAGCAAAGGGAGGAAGAAGGTGGTTATGGCGAGGAGGAGGAGGAGGAGAAGGAGGAAAAGAAGAAGGACTGTTGGAGGTAGTGGTGGTGAAACGGGGCCTGTTGATACTGGGAGGCCCAAGAGGGGGGTTCAGAAAGGTAATGCTGGTGGTGGTGGCGACAATGTGGATGATGGTGAGGCTGTTGATCCTGCTTCTGCGCCCGCAAAGCTGTCCAACGTTGAAGCTAGTAAGAAAGCTGCGTTGGGTGGTTCGAGGAGGAGGGGTGCTGCCAATTTAGGTAAATTGGACCTCAATGTGGAGTTTAGCAATGAGGTGGAAGAAGCTGCTGCTGCAGGAGTGAAAGAACGGAATGTGAATGGGACTGGAAATCCGGAGGACAATATTGAAGGGATTGGTTTTTTTGAAGGGCTTGATGAGTTCCTTAGTAGCTTACCAATTCTAAATGTTGTTGCAGATGACAAGGTTAAGGGTCATTAG 1542 0.4916 MDGTNRGEAERWLYTANKLLSARDLHGARSFAIRARESDPRFEATELLLAVIDTLLAGEVQIKEHLDYYAILQTLRYTQNIEYIAVQFRRLAVLLDPHRNPFAFAAHAFSLVHDAWSIFSSPHKKALYDEQLHFLTQPPPPQPQPIQPPPPPPQPQPIQPSPPSVQVNHNHDLQHRNNPNVIAEEQNNNGPRRSLSNIDRPTRPCQSNVDKPTEPKPVDSEVGSFWTACPYCYAMFEYPNVYQECTLRCQNCRKGFHAVVVRSPPELAEDGSLFCSFGYIPLGFSGDFKDISGSSSEWNPVSTLFPCTMKGASSKRGAPRGPVVYHDHDTCVAFAELSEETEDDTDDDDWWRGDDSKGRKKVVMARRRRRRRRKRRRTVGGSGGETGPVDTGRPKRGVQKGNAGGGGDNVDDGEAVDPASAPAKLSNVEASKKAALGGSRRRGAANLGKLDLNVEFSNEVEEAAAAGVKERNVNGTGNPEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10734 513 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 381 - -
Vifa1g10734 513 CDD DnaJ 67 120 IPR001623 -
Vifa1g10734 513 MobiDBLite consensus disorder prediction 136 162 - -
Vifa1g10734 513 MobiDBLite consensus disorder prediction 343 423 - -
Vifa1g10734 513 MobiDBLite consensus disorder prediction 134 219 - -
Vifa1g10734 513 SUPERFAMILY Chaperone J-domain 61 134 IPR036869 -
Vifa1g10734 513 Pfam DnaJ domain 67 129 IPR001623 -
Vifa1g10734 513 Gene3D DnaJ domain 63 134 IPR036869 -
Vifa1g10734 513 MobiDBLite consensus disorder prediction 163 209 - -
Vifa1g10734 513 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Vifa1g10734 513 MobiDBLite consensus disorder prediction 362 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10734 Vifa-Chr1 1805078513 1805080054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10734 8 512 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 37.170 1.02e-90 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10734 - - mtr:11433870 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10734 1 1805078513 1805080054 Vifa1g10734 1 1805078513 1805080054 PCT