Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10727 ATGGTTAAGGCTGATGAGTCTTTGCCTTTCGCAGAGCATGTGGCTTGGCCATCTCTTTATTTGAAAGGCGCCAGCACATTGCCGGATCCTAGTTTTTGTGGTCAGTCAGCATATCTGAATCCTGGCATATGCACTCTTCCGACTCTCAGTGCATTTCCAGGGTTCACAACTCCTGCTACTCCAAGCCTGCAGACTGATCAGACCAATGAAGTGCGAGGGTTCATTCCGGATCCCAAAACCGGACCGTGTTTGAAAGAAAGAAATAATTACGGAGCTATGCAAAATGGAAATTCTGCATCTTTGCAGAAGAAATTTATTATATTTGACCGGTCTGGTAATAAGACAAGGTTGTTTTATAGTCCTGTCTTCCCACTTAATCAGAGTCCAATTGATACTACTATGCAATTCGCTCAAGCTTACGAAGTTAATCAGGACAGATGGGCAACTAGTTTTGGTCAAAAGCATTTACCGAAATACAGTTTGCCTGATGAGTCTGATCAGGATCATGTAGTAAATGAAGAAAGTGAAATGCGTGAAAACACAGAAGAAATCAATGCATTGCTTTATTCTGATGGTGATGAGGATGATGATGAAGACGACGAGGTAACAAGTACAAACCATTCTCCATTGAGTAAAAACCCATTTGAGGACATAAATGAGGACGTCGCTAGCTCTGATTGGCCAAGCAAACGGCATAAGCTAATTGACGGTGGGTATGCAAGATTACCTCCGCCTCTGAACAGTGCTAGTTCAGTAAGACTAAACGAACCATCTGAGTGTGTCAGCGATGCCGAGTCCAAGTACTCTGGTGGCCAAATGTATTTTACCAGGAAAACCGAAGAGGATAATAATTCAGCTGTTGGTGATATTCAATTGAGAAAGGCTAAGATCCGCGAATCATTGAAAATTCTCGAGAACTTAACTCCCGGAGCAAAAGGAAAGCATCCACTGTTAGTCATCGATGAAACTATGGATTACTTAAAATCTTTGATGTCTCAAACTGGAATGCTTGGGGTAAAATATCACTAA 1029 0.4198 MVKADESLPFAEHVAWPSLYLKGASTLPDPSFCGQSAYLNPGICTLPTLSAFPGFTTPATPSLQTDQTNEVRGFIPDPKTGPCLKERNNYGAMQNGNSASLQKKFIIFDRSGNKTRLFYSPVFPLNQSPIDTTMQFAQAYEVNQDRWATSFGQKHLPKYSLPDESDQDHVVNEESEMRENTEEINALLYSDGDEDDDEDDEVTSTNHSPLSKNPFEDINEDVASSDWPSKRHKLIDGGYARLPPPLNSASSVRLNEPSECVSDAESKYSGGQMYFTRKTEEDNNSAVGDIQLRKAKIRESLKILENLTPGAKGKHPLLVIDETMDYLKSLMSQTGMLGVKYH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10727 342 MobiDBLite consensus disorder prediction 188 202 - -
Vifa1g10727 342 MobiDBLite consensus disorder prediction 159 181 - -
Vifa1g10727 342 PANTHER TRANSCRIPTION FACTOR BHLH145 12 340 IPR037546 -
Vifa1g10727 342 MobiDBLite consensus disorder prediction 158 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10727 Vifa-Chr1 1803715021 1803716049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10727 83 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09460 36.047 4.29e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10727 - - gmx:100778385 376.711