Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10723 ATGAGATTACATCACAGAAAATTGATCTCAGAAATATGCGACTCGATATGTCACATACCTAATTGTTCATCAAACAAAGATTGCACTGTTTGCTTCAATATTTGTTTAACCAATCTCCAAAACCCTTATTACTATTCTCCACCACCACCACCACCACAAGAAGAATTTCCCTTCTACAATTCAAATCAAAACCAGCACAAAATCACCAATTACTTCATCATCATTCTTTCTCTTCTTGCTCTTATTTTCTTTCTTGTTTGTATTCGTGCAGTTTATGTCAATTGTAGTTCAAGAAGAAGAAGGTTTAGGTCAAGTGCAGTGGCAAGGACAAGAACACCACAACCACCATCATCATCATTATCAGCAAGGGTTCAACAAATCCAGGTGATGAATTTTGATGATGAACAGCATGATGAATCTGTTGTGGATCATCCAATTTGGTATATTCGAACTCAAGGTCTTCATGAATCAGTTATAAATGCAATTAGTGTTTGTAAGTATAAGAAAGGTGAAGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAGTTTGAACAAGATGAGAGTCTCAGACTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACGTGGCTTACTTCTCATACTAATTGTCCTATGTGTAGAGCTCCTATTCTTAATACTAACCCTACAATTCCAAGGGTTGACTCTTTAGAATCTATTGTTGTTCATTCTCATGCACAAACTGAGGTTTCTGATGAAAATAGTGCTGAAACTCAATCCAATTTAGGGTTTGAAAATAGGGTTTTTGATTCTGAATTGAGGAATGGGGCTGCAGAAGAAGAAGATGAAGGAGGGCAATTGGAGGTATGTGAAAATGGAAGACCAGATGTCGATGCGGTTAGCGGTAGTATTAGTAATCGGCCTAGGAGATCGGTTTCTATGGATGATTCTTTTGTTGCAGGTATCAATAATGTTCTTGCAACTGTTGTATCAAAAGAATGTAATGGTAATGAAGATAGTGTTTTGAAGGTTAATGGAAGTGAGAATTTGGCAACTACATCTAAAGGTAGTAATAGTACTAGTTTTTCTTTTAGGTCAGCAAGATATTTACAGGGTATTCCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAATTTCTTCTATCTTGGTATAGCCGCAATCAGAAAAGGCCAAATGCTATTCTGAGAAGCTTTTGA 1221 0.3628 MRLHHRKLISEICDSICHIPNCSSNKDCTVCFNICLTNLQNPYYYSPPPPPPQEEFPFYNSNQNQHKITNYFIIILSLLALIFFLVCIRAVYVNCSSRRRRFRSSAVARTRTPQPPSSSLSARVQQIQVMNFDDEQHDESVVDHPIWYIRTQGLHESVINAISVCKYKKGEGLIEGTECSVCLSEFEQDESLRLLPKCHHAFHLPCIDTWLTSHTNCPMCRAPILNTNPTIPRVDSLESIVVHSHAQTEVSDENSAETQSNLGFENRVFDSELRNGAAEEEDEGGQLEVCENGRPDVDAVSGSISNRPRRSVSMDDSFVAGINNVLATVVSKECNGNEDSVLKVNGSENLATTSKGSNSTSFSFRSARYLQGIPSPMKRSSSYNGKFLLSWYSRNQKRPNAILRSF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10723 406 ProSiteProfiles Zinc finger RING-type profile. 179 221 IPR001841 -
Vifa1g10723 406 Pfam Ring finger domain 178 221 IPR001841 -
Vifa1g10723 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 228 IPR013083 -
Vifa1g10723 406 FunFam RING-H2 finger protein ATL54 154 227 - -
Vifa1g10723 406 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 61 228 IPR044675 -
Vifa1g10723 406 SMART ring_2 179 220 IPR001841 -
Vifa1g10723 406 SUPERFAMILY RING/U-box 173 228 - -
Vifa1g10723 406 CDD RING-H2_EL5-like 178 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10723 Vifa-Chr1 1803473304 1803474524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10723 2 233 C3H Transcription Factor Family AT1G72220 39.683 1.81e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10723 - - tpra:123908556 475.707