Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10722 ATGGAACATGATCGCAGAAAACTGATCCCAGAGTTATGCGAGTTGATATGTCATGGAATAAACTCTGTATCTAAATGTTCATTGAACAATGATTGCGCTAATTGCTTCAAAAACTGTCTCAAAACCAATCCTCAATACCCTTATTACTATTATCCTCCACCACCACCACAAGAATTTCCTTTCTACTCCTCATCCAATCAAAACCAGCACAAAATCACCAATTACTTCATTCTTATTCTTTCTCTTCTTGCTCTTATTTTCTTACTTGTTTGTATTCGTGCAATTTATGTCAATTGTAGTTCAAGAAGAAGAAGGTTTAGGTCAAGTGCAGTGGCAAGGACAAGAACACCACCACCACCATCATCATCATTATCAGCAAGGGTTCAACAAATCCAGGTGATGAATTTTGATGATGAACAGCATGATGAATCTGTTGTGGATCATCCAATTTGGTATATTCGAACTCAAGGTCTTCATGAATCAGTTATAAATGCAATTAGTGTTTGTAAGTATAAGAAAGGTGAAGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAGTTTGAACAAGATGAGAGTCTCAGACTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACGTGGCTTACTTCTCATACTAATTGTCCTATGTGTAGAGCTCCTATTCTTAATACTAACCCTACAATTCCAAGGGTTGACTCTTTAGAATCTATTGTTGTTGATTCTCATGCACAAACTGAGGTTTCTGATGAAAATAGTGCTCAAACTCAATCCAATTTAGGGTTTGAAAATAGGGTTTTTGATTCTGAATTGAGGAATGGGGCTGCAGAAGAAGAAGATGAAGGAGGGCAATTGGAGGTATGTGAAAATGGAAGACCAGTTGTCGATGCGGTTAGCGGTAGTATTAGTAATCGGCCTAGGAGATCGGTTTCTATGGATGATTCTTTTGTTGCAGGTATCAATAATGTTCTTGCAACTGTTGTATCAAAAGAATGTAATGGTAATGAAGATAGTGTTTTGAAGGTTAATGGAAGTGAGAATTTGGCAACTACATCTATAGGTAGTAATAGTACTAGTTTTTCTTTTAGGTCAGCAAGATATTTGCAGGGTATTCCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAATTTCTTCTATCTTGGTATAGCCGCAATCAGAAAAAGCCAAATGCTATTCTGAGAAGCTTTTGA 1233 0.3658 MEHDRRKLIPELCELICHGINSVSKCSLNNDCANCFKNCLKTNPQYPYYYYPPPPPQEFPFYSSSNQNQHKITNYFILILSLLALIFLLVCIRAIYVNCSSRRRRFRSSAVARTRTPPPPSSSLSARVQQIQVMNFDDEQHDESVVDHPIWYIRTQGLHESVINAISVCKYKKGEGLIEGTECSVCLSEFEQDESLRLLPKCHHAFHLPCIDTWLTSHTNCPMCRAPILNTNPTIPRVDSLESIVVDSHAQTEVSDENSAQTQSNLGFENRVFDSELRNGAAEEEDEGGQLEVCENGRPVVDAVSGSISNRPRRSVSMDDSFVAGINNVLATVVSKECNGNEDSVLKVNGSENLATTSIGSNSTSFSFRSARYLQGIPSPMKRSSSYNGKFLLSWYSRNQKKPNAILRSF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10722 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 232 IPR013083 -
Vifa1g10722 410 SUPERFAMILY RING/U-box 177 233 - -
Vifa1g10722 410 SMART ring_2 183 224 IPR001841 -
Vifa1g10722 410 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Vifa1g10722 410 FunFam RING-H2 finger protein ATL54 158 231 - -
Vifa1g10722 410 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 64 230 IPR044675 -
Vifa1g10722 410 CDD RING-H2_EL5-like 182 225 - -
Vifa1g10722 410 Pfam Ring finger domain 182 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10722 Vifa-Chr1 1803461974 1803463206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10722 80 237 C3H Transcription Factor Family AT1G72220 48.734 4.89e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10722 - - tpra:123908556 462.996