Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10710 ATGACCATGGTTGTGCACTCAACACAGCTACTGAAGATGGCGGTTCTTACAGTCTTTTTCATAAAAGCAACAACTCAGTTACTATCGCTACCAAACTGCCCAACAAAGTGTGGCTCTGTCACCATTCCCTTCCCATTTGGAACCACCAAGGATTGTTCCTTGGACAGCACCTTTCTCATAAATTGCAACAAAACATCTTCATCTTCAACCTCATCACAAGTACCTTCCTTGCCACATAGTAATCAAAGTGTCTTAAACATCTCGCTCAATGGTGAACTTCACGTTGCATGGCCAGTAGCGAGAGATTGCTATGCTGAAAAGAGTAAACTTGTGAGCCAAATATATCGGGGTATCGATCTAAAACATTTTTCCATCTCGTCAACTCAAAACAAGTTGGTCGCAGTTGGCTGTGATACGATGGGAGCACTCACAGCATATGATGATGTGGGAAACAACTACACCACAGGATGTGTGGCTTTATGCAACGGGCTTGATGATATTGTGGCTAATGAAGCTTGTTCTGGCACTGGTTGTTGCGAGATTTCAATACCTCAAGGTCACGTGTTAACTAAAATAATCTATACTTCAGTGAGTGTATTCAACAATCACTCAGAAGTATATGACTTCAATCCATGTGGTTATGCTTTTTTGGTTGAAAATGGAGCCTACAACTTCAAATCCACAGACCTGCTCAAGTTGGAGAAGGAGTTTCCTATGTTGTTGGACTGGGCAGTAGGGAACCAAACATGCCATCAAACACAGAAGGATCTTTCAAATTATGCCTGCAAGGACAACAAAAGTACATGTTATGATGCGACCGAGAGATCTGGTTACCTTTGCAGATGCTTTCATGGATATTGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCATGGATTCCAATGACTGTGTTGAGGGGGCAACGTGCATCAATACTCCCGGAAGCTACCATTGTTTATGTCCGGCAAGATATGAGGGAAACGGGAAGTTGAATGGAACAAGATGCAGATCAAATACCAAATCAAGGAAAGAGATCATATTGATCACTGCATTGAGTGCCAGCATCAGCCTCGTAGCGCTACTGGTCGGAAGCTTTTATGCATACTTGGCATTGAAAAAAAGAAAGCTCATTAAACTTAAAGAACAATTTTTTCAACAAAACGGTGGCTTACTATTACAGCAACAACTAGTGATGCATGGAGGGTCAGATGAAACAACTAAAGTCTTCACTGTTGAGGAGCTAAATGAAGCAACCAACAACTTCAACGAAAGCAAGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAATTTTACAAGATAAAAGAATTGTAGCAATAAAGAAATCCAAAATCAATGACCCAAACCAGATTGAGCCGTTCATCAATGAAATGATTGTGCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTTTTGGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCTAATGGTACTGTTTATCAGCATCTCCATGATCAAAACCAATCTTTAAAACTTACATGGAAAACAAGATTGAGAATAGCAAAAGAAACAGCTGGAGTCTTGGCATACTTGCATTCTGCTGCATCTACGCCAATCATACATAGAGATGTGAAGTCTGCTAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTGTTCCTCTTGATCATAGCCAAATAACCACTCTAGTACAGGGGACACTAGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTAACAGACAAAAGTGATGTATATAGCTTTGGGGTTGTCCTAGCAGAGCTAATGACAGGAAAAAAGGCACTGTCATTTAGCAGGCCAGAGATAGATAGAAACCTTGCAGTGTACTTTGTTTCTTCAATGAAAGAGAATCGGTTACTTCATATTTTGGACAACAATATAGATGATGTGAATACTGAGCAACTTAAAAAAATTGCCCATATTGCAGAAAGGTGTTTAAGGGTAAAGGGTGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTCGAGGGAATATTAGTTTTTGAAGAGCACCATTGGGGAAGTGGCAAATTGTCTTCAGACAGAGCAGCGTCATCGGCTATCAATGTTGAAAACGGAGTTTACAGAAGCAGCACTATTTCTTCTAACTCGTATAGCATAAACCAGATATCAATGTCCTTGATTGGTGGAAGATGA 2256 0.4051 MTMVVHSTQLLKMAVLTVFFIKATTQLLSLPNCPTKCGSVTIPFPFGTTKDCSLDSTFLINCNKTSSSSTSSQVPSLPHSNQSVLNISLNGELHVAWPVARDCYAEKSKLVSQIYRGIDLKHFSISSTQNKLVAVGCDTMGALTAYDDVGNNYTTGCVALCNGLDDIVANEACSGTGCCEISIPQGHVLTKIIYTSVSVFNNHSEVYDFNPCGYAFLVENGAYNFKSTDLLKLEKEFPMLLDWAVGNQTCHQTQKDLSNYACKDNKSTCYDATERSGYLCRCFHGYWGNPYLIHGCQDINECMDSNDCVEGATCINTPGSYHCLCPARYEGNGKLNGTRCRSNTKSRKEIILITALSASISLVALLVGSFYAYLALKKRKLIKLKEQFFQQNGGLLLQQQLVMHGGSDETTKVFTVEELNEATNNFNESKILGQGGQGTVYKGILQDKRIVAIKKSKINDPNQIEPFINEMIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTVYQHLHDQNQSLKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSANILLDHNLTAKVSDFGASRIVPLDHSQITTLVQGTLGYLDPEYFHTSQLTDKSDVYSFGVVLAELMTGKKALSFSRPEIDRNLAVYFVSSMKENRLLHILDNNIDDVNTEQLKKIAHIAERCLRVKGEERPTMKEVAMELEGILVFEEHHWGSGKLSSDRAASSAINVENGVYRSSTISSNSYSINQISMSLIGGR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10710 751 CDD EGF_CA 298 331 - -
Vifa1g10710 751 SMART egf_5 301 341 IPR000742 -
Vifa1g10710 751 SMART egf_5 249 297 IPR000742 -
Vifa1g10710 751 Gene3D Transferase(Phosphotransferase) domain 1 502 710 - -
Vifa1g10710 751 FunFam Wall-associated receptor kinase 2 396 501 - -
Vifa1g10710 751 SUPERFAMILY Protein kinase-like (PK-like) 410 695 IPR011009 -
Vifa1g10710 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 314 325 IPR000152 -
Vifa1g10710 751 Pfam Protein kinase domain 426 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10710 751 SUPERFAMILY EGF/Laminin 297 333 - -
Vifa1g10710 751 Pfam Calcium-binding EGF domain 298 340 IPR001881 GO:0005509
Vifa1g10710 751 ProSiteProfiles Protein kinase domain profile. 426 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10710 751 ProSiteProfiles EGF-like domain profile. 298 341 IPR000742 -
Vifa1g10710 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 698 IPR045274 GO:0007166
Vifa1g10710 751 FunFam Wall-associated receptor kinase 2 502 718 - -
Vifa1g10710 751 FunFam Fibrillin 2 293 336 - -
Vifa1g10710 751 ProSitePatterns Calcium-binding EGF-like domain signature. 298 323 IPR018097 GO:0005509
Vifa1g10710 751 SMART serkin_6 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10710 751 Pfam Wall-associated receptor kinase galacturonan-binding 33 91 IPR025287 GO:0030247
Vifa1g10710 751 CDD STKc_IRAK 432 698 - -
Vifa1g10710 751 Gene3D Laminin 247 340 - -
Vifa1g10710 751 SMART egfca_6 298 341 IPR001881 GO:0005509
Vifa1g10710 751 Gene3D Phosphorylase Kinase; domain 1 395 501 - -
Vifa1g10710 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10710 Vifa-Chr1 1800799599 1800802475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10710 3 706 Receptor kinase-like Gene Family AT1G21230 48.548 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa1g10710 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10710 - - mtr:25489730 1016.91