Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10709 ATGCCTATGGCTGTGCAGTCAAAACAGCTGCTGCTGATGATGGTCTTTTTTGCAAAAGCAGCTACTCAGTTAATATCTATGCCAAATTGTCCAACAAAGTGTGGCTCTATCACCATTCCATTCCCATTTGGAACCAGCAAGGATTGTTCCTTAGACAACACCTTTCTCATCAATTGCAACAAAACATCTTCATCTTCAACCTCAACACAAGTACCTTCCTTGCCATATAGTAATCAAACTGTCCTAAACATCTCACTCAACGGTGAACTTCACGTTGCATGGCCAGTAGCCAGAGATTGCTATGCTGAAAATAGAAAACTTGTGAACCAAACATATTGGGGTATGAGTATAAATCATTTTTCCATCTCATCAACTCAAAACAAGTTGGTCGCAGTTGGCTGTGACACGATTGGAGCCCTCTCAGCATTTGATTATGGGGGAAACAACTACACCACAGGATGTGTGGCTTTGTGTAACAGGCATAATGATATTGTGGCCAATGAATCCTGCTCCGGCACAGGTTGTTGCGAGATTTCAATACCCCAAGGTCATGTGTTAAATCAAGTAGCCTATACTTCTGGAAGTGTATTCAACAATCACTCTGCAGTACATGACTTCAATCCCTGTGGTTATGCTTTTTTGGTTGAAAATGGAGCCTACAACTTCAAATCCACAGACATCCTCAAGCTGGAGAAGAAAGAGTTTCCTGTGTTGTTGGACTGGGCTGTAGGGAATCAAACATGCCAGCAAGCTCAGAAGGAACTTTCAAGTTATGCATGTAAGGACAACAAAAGCACATGTTATGATGCAACTGAGAGATCTGGTTACCTTTGTAGATGCTTTCATGGATATTGGGGAAATCCTTACCTCATTCACGGTTGCCAAGATATTAATGAATGCATGGACTCCAATGACTGTGTTGAGGGAGCAACGTGCATCAATCTTCCTGGAAGCTACCAATGTATATGTCCAGCAGAATATGAGGGAAACGGGAAGATGAATGGAACAAAATGCAACCCAAAATCCAGTACCAAAACAAGGAAAGAGATCATATTGATTATTGCATTGAGTGTCAGCATAAGTTTCGCAGCACTACTGGTGGGAAGCTTTTATGCGTATTTGGCATTGAAGAAAAGAAGGCTCATTAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCATGCTGTTACAACAAAAGATAATGAGGCATGGAAAGTCAACTGAAACAGCTAAAGTATTCACTGTTGAGGAGCTAAATGAAGCAACCAACAACTTCGACGAAAGCAAGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTATAAAGGAGTTTTACAAGATAAAAGACTTGTAGCAATAAAGAAATCAAAAATCAGTGACAGAAAGCAGATTGAGCCGTTCATCAATGAAGTGATCGTGCTTTCCCAAATCAACCATCGAAATGTGGTAAGGCTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCTAATGGTACTGTTTATGAGCATCTTCATGATCAAAACCAAATTTTAAAGCTAACATGGAAAACAAGATTGGGAATAGCCAAAGAAACTGCTGGAGTCCTAGCATACTTGCATTCTGCTGCATCTACGCCAATCATACATAGAGATGTGAAATCTTCAAATATACTCCTAGATCACAATCTCGTTGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTGTTCCTATTGATCATAGTCAGATAACCACCCTTGTGCAGGGGACATTAGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTGACAGAGAAAAGTGACGTATATAGCTTTGGGGTTGTCCTAGCAGAGCTACTAACGGGAAAGAAGGCACTATCATTTAGCAGGCCAGAGGGAGATAGAAACCTTGCAGTGTACTTTGTTTCTTCAATGAAAAAGGGTCAGGTACTTCATATTTTAGACAAAAATTTAGATGGGGCTAATACTGAGCAACTAAAGGAAGTTGCCCATATTGCAGAAAGGTGTTTAAGGGTGAAGGGTGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATTTTAGTTTTTGAAGAGCATTGTTGGGGACGTAGCAATTTGTCTTCAGAAGAGACTAACAACTTGCTCAGAGAAACGTCGGTTATCAATGTTGAAGATGGTGGCCTTAATTCCTCGGACTCATATAGTATAAACCAGATTACGATGTCAACGATTGGTGGAAGATGA 2259 0.4064 MPMAVQSKQLLLMMVFFAKAATQLISMPNCPTKCGSITIPFPFGTSKDCSLDNTFLINCNKTSSSSTSTQVPSLPYSNQTVLNISLNGELHVAWPVARDCYAENRKLVNQTYWGMSINHFSISSTQNKLVAVGCDTIGALSAFDYGGNNYTTGCVALCNRHNDIVANESCSGTGCCEISIPQGHVLNQVAYTSGSVFNNHSAVHDFNPCGYAFLVENGAYNFKSTDILKLEKKEFPVLLDWAVGNQTCQQAQKELSSYACKDNKSTCYDATERSGYLCRCFHGYWGNPYLIHGCQDINECMDSNDCVEGATCINLPGSYQCICPAEYEGNGKMNGTKCNPKSSTKTRKEIILIIALSVSISFAALLVGSFYAYLALKKRRLIKLKEQFFQQNGGMLLQQKIMRHGKSTETAKVFTVEELNEATNNFDESKILGQGGQGTVYKGVLQDKRLVAIKKSKISDRKQIEPFINEVIVLSQINHRNVVRLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQILKLTWKTRLGIAKETAGVLAYLHSAASTPIIHRDVKSSNILLDHNLVAKVSDFGASRIVPIDHSQITTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFSRPEGDRNLAVYFVSSMKKGQVLHILDKNLDGANTEQLKEVAHIAERCLRVKGEERPTMKEVAMELEGILVFEEHCWGRSNLSSEETNNLLRETSVINVEDGGLNSSDSYSINQITMSTIGGR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10709 752 ProSiteProfiles EGF-like domain profile. 296 339 IPR000742 -
Vifa1g10709 752 SUPERFAMILY Protein kinase-like (PK-like) 408 695 IPR011009 -
Vifa1g10709 752 Gene3D Phosphorylase Kinase; domain 1 400 501 - -
Vifa1g10709 752 SMART serkin_6 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10709 752 FunFam Fibrillin 2 291 335 - -
Vifa1g10709 752 Gene3D Laminin 245 338 - -
Vifa1g10709 752 SMART egf_5 247 295 IPR000742 -
Vifa1g10709 752 SMART egf_5 299 339 IPR000742 -
Vifa1g10709 752 Pfam Calcium-binding EGF domain 296 338 IPR001881 GO:0005509
Vifa1g10709 752 SMART egfca_6 296 339 IPR001881 GO:0005509
Vifa1g10709 752 SUPERFAMILY EGF/Laminin 295 331 - -
Vifa1g10709 752 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
Vifa1g10709 752 ProSitePatterns Calcium-binding EGF-like domain signature. 296 321 IPR018097 GO:0005509
Vifa1g10709 752 FunFam Wall-associated receptor kinase 2 396 501 - -
Vifa1g10709 752 CDD EGF_CA 296 329 - -
Vifa1g10709 752 Pfam Protein kinase domain 427 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10709 752 FunFam Wall-associated receptor kinase 2 502 718 - -
Vifa1g10709 752 Gene3D Transferase(Phosphotransferase) domain 1 502 710 - -
Vifa1g10709 752 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 699 IPR045274 GO:0007166
Vifa1g10709 752 CDD STKc_IRAK 432 698 - -
Vifa1g10709 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Vifa1g10709 752 ProSiteProfiles Protein kinase domain profile. 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10709 752 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 312 323 IPR000152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10709 Vifa-Chr1 1800796012 1800798724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10709 3 720 Receptor kinase-like Gene Family AT1G21230 47.880 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa1g10709 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10709 - - mtr:25489730 1016.91