Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10700 ATGAGGGCATGTATCATATTGCATAATATGATTCTTGAGGATGAACGAGATACATATTCTCAATATTGGACAGATTATGATCAATCTGAGGCAAGTGGGTCTGGTACACTGGAGCCTTTCTCGACCGAGATACTACCTGCATTTGTAAATCATGTGCGTGCTAGATCTGTGATGTTGAACACATCATTCATAATTAAGATGGCTAATTCCCTGAGGGTTCCAAATCTGATTGGGGGCAAGTTTGTTGAGTCAAAATCATTGACATTCATAGATGTTATAAACCCTGCCACACAAGACGTTGTTTCACAAGTTCCTTTGACTACAAATGAAGAGTTTAAAGCTGCAGTGGCTGCAGCAAAGAAGGCATTTCCTTCATGGCGTAACACTCCGATCACGAAACGTCAACGTGTGATGTTGAAGTTCCAGGAGCTTATACGCCGAGATATGGATAAACTTGCCATCAGCGTGACCACCGAACAAGGAAAGACGTTAAAGGATGCACAAGGAGATGTGTTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACACTACAGATGGGAGAGTATGTTTCCAATGTGGCAAATGGAATTGATACTTTTAGCATTAAAGAGCCAATTGGTGTTTGTGCCGGTATCTGTCCTTTTAACTTTCCTGCAATGATTCCCCTCTGGATGTTCCCAGTGGCGGTTACCTGTGGCAATACCTTCATTCTGAAACCATCAGAGAAAGATCCAGGTGCTTCTATGCTTCTTGCACAACTGGCAATGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAGCCCATGATACTGTGAATGCTATATGCGATCACGATGATATCAAAGCTATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGAAAGCGTGTTCAGTCTAATATGGGGGCAAAAAATCATGCAATTGTCATGCCAGATGCAAGTGTTGATGCTACCATAAATGCTTTAATTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTTTAAGTACAGTTGTTTTTGTTGGTGGCTCAAAACCATGGGAAAGTATACTCGTAGAGCGTGCCAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCAGACCTTGGTCCAATCATTAGCATACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGATTTGAAAGTGGGGCCAGACTATTGCTTGATGGAAGAAGTATAGTGGTCCCCGGATATGAATCCGGCAATTTTATTGGCCCGACCATCTTAGCAGATGTCAGTTCCGACATGGAGTGCTACAAGGAGGAGATTTTCGGCCCTGTTCTTCTTCTCACGGAGGCTGATAGCTTGGATGAGGCCATAAAGTTTGTCAATGAAAACAAGTATGGAAATGGTGCTACTATATTCACTAGATCTGGTGTTGCTGCTAGGAAATTTCAGACCGAAATCGAGGCAGGCCAGGTGGGAATCAATGTTCCTATTCCCGTTCCTTTGCCATTTTTCTCCTTTACCGGAAACAAAGCATCATTTGCAGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTATACACAAATCAAAACAATAACTCAGAATTGGAAGGATTCGGTTAACAATGACAAGATTAACATGGCAATGCCAACTTCTCAAAAATCTTTCGAGTGA 1713 0.4267 MRACIILHNMILEDERDTYSQYWTDYDQSEASGSGTLEPFSTEILPAFVNHVRARSVMLNTSFIIKMANSLRVPNLIGGKFVESKSLTFIDVINPATQDVVSQVPLTTNEEFKAAVAAAKKAFPSWRNTPITKRQRVMLKFQELIRRDMDKLAISVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVANGIDTFSIKEPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASMLLAQLAMEAGLPEGVLNIVHGAHDTVNAICDHDDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAIVMPDASVDATINALIAAGFGAAGQRCMALSTVVFVGGSKPWESILVERAKALKVNAGTEPDADLGPIISIQAKERIHKLIQSGFESGARLLLDGRSIVVPGYESGNFIGPTILADVSSDMECYKEEIFGPVLLLTEADSLDEAIKFVNENKYGNGATIFTRSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQNWKDSVNNDKINMAMPTSQKSFE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10700 570 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 77 324 - -
Vifa1g10700 570 Pfam Aldehyde dehydrogenase family 81 545 IPR015590 GO:0016491
Vifa1g10700 570 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 75 549 IPR010061 GO:0004491
Vifa1g10700 570 SUPERFAMILY ALDH-like 62 550 IPR016161 GO:0016491
Vifa1g10700 570 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 63 565 IPR010061 GO:0004491
Vifa1g10700 570 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 318 518 - -
Vifa1g10700 570 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 343 354 IPR016160 GO:0016491
Vifa1g10700 570 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 318 518 IPR016163 GO:0016620
Vifa1g10700 570 CDD ALDH_F6_MMSDH 73 549 IPR010061 GO:0004491
Vifa1g10700 570 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 526 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10700 Vifa-Chr1 1798411735 1798417236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10700 72 533 Aldehyde Dehydrogenase Gene Family AT2G14170 82.251 0.0 795