Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10694 ATGCAATCAAAGATTGTTACCAACTCTTCTAATGTTTTAAATAGTTACAATAAAGTCTTAGTAACCAATCATGGTAATATTTTTTCCTATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGTGAGTTTTTAGGACATGTGTTTGAATACACAACAAAGAAAGGAGATACTTACGATTTGATTGCAAATAATTATTATGTAAGTTTGACTAGTTTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTCACTGTCAATTGTTCTTGTGGGAATAGCCAGATTTCAAAAGACTATGGATTGTTTGTTACTTATCCGTTAAGGTCTATGGATACTCTTGAGAAGATTGGGAACGAGTCTAAACTAGATGAAGGGTTGATACAAAATTTCAATCCTAATGTTAATTTCAGTAGAGGAAGTGGGATAATGTTCATTCCAGGAAGAGATAAAAATGGAGAATATGTTCCTTTGTATCCTAGAACAGGTTTTGCTAAGGGTGCAGCTGTTGGTATATGGATAGCAGGAGTATTCGGGCTTCTATTATTTGTTATTTGTATATATGTCAAATACTTCCAGAAAAAGGAAGAAGAGAAAACTATACTGCCCCAAATTTCTAAGGTGCTTTCAACTCAAGATGCCTCGGGTAGTGGAGAATATGAAACTTCAGGATCTAGTGGGTATGGTACTGGTAGTGCTGCTGGGCTTACAGGAATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCTAAGGCTACAAATAACTTTAGTTTGGATAATAAAATTGGTCAAGGTGGATTCGGAGCTGTCTATTATGCCGAACTCCGAGGCGAGAAAACAGCAATTAAGAAAATGAATGTACAAGCATCAACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCATTTGAATCTGGTGAGGTTGATTGGATATTATGTTGAGGGATCGCTTTTCCTTGTATACGAACATATTGACAATGGAAACGTGGGTCAATATTTGCATGGTTTAGGTAAAGAGCCATTACCATGGTCTAGTAGAGTCCAAATTGCTCTAGATTCTGCAAGAGGCCTTGAATACATTCATGAACACACTGCGCCAGTTTATATCCATCGCGATGTAAAATCAGCAAACATATTGGTAGACAAAAACTTGCGGGGAAAGATTTTGGCTTGA 1227 0.361 MQSKIVTNSSNVLNSYNKVLVTNHGNIFSYFRINIPFPCECIGGEFLGHVFEYTTKKGDTYDLIANNYYVSLTSFELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQISKDYGLFVTYPLRSMDTLEKIGNESKLDEGLIQNFNPNVNFSRGSGIMFIPGRDKNGEYVPLYPRTGFAKGAAVGIWIAGVFGLLLFVICIYVKYFQKKEEEKTILPQISKVLSTQDASGSGEYETSGSSGYGTGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFGAVYYAELRGEKTAIKKMNVQASTEFLCELKVLTHVHHLNLVRLIGYYVEGSLFLVYEHIDNGNVGQYLHGLGKEPLPWSSRVQIALDSARGLEYIHEHTAPVYIHRDVKSANILVDKNLRGKILA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10694 408 SMART serkin_6 271 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10694 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Vifa1g10694 408 Gene3D Phosphorylase Kinase; domain 1 251 341 - -
Vifa1g10694 408 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 406 IPR044812 GO:0019199|GO:0045087
Vifa1g10694 408 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Vifa1g10694 408 Gene3D Transferase(Phosphotransferase) domain 1 342 408 - -
Vifa1g10694 408 Pfam Protein tyrosine and serine/threonine kinase 272 406 IPR001245 GO:0004672|GO:0006468
Vifa1g10694 408 Pfam LysM domain 53 91 IPR018392 -
Vifa1g10694 408 ProSiteProfiles LysM domain profile. 51 97 IPR018392 -
Vifa1g10694 408 ProSiteProfiles Protein kinase domain profile. 271 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10694 408 SUPERFAMILY Protein kinase-like (PK-like) 253 406 IPR011009 -
Vifa1g10694 408 FunFam LysM receptor kinase 2 250 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10694 Vifa-Chr1 1797609675 1797611591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10694 32 406 Receptor kinase-like Gene Family AT3G21630 55.172 4.72e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g10694 PK_Tyr_Ser-Thr 9.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10694 - K13429 tpra:123921801 686.411