Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10692 ATGGGAAGAGGAAAGATTGCGATTAGGAGGATTGATAATTCAACAAGCAGGCAAGTAACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCTAAAGAGTTATCCATTCTCTGTGATGCTGAAGTTGGATTGATTGTTTTTTCAAGCACTGGAAGGCTCTATGATTATTCAAGCACTAGCATGAAAGCTGTTATCGAACGCTATAACAAACAGAAAGAAGAACAGCATCAACTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCTGGACTGAGACAACAACTGCAGTACCTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTTCTGGCTTGGGTATTAAAGAACTACAAAATCTGGAAAATCAACTGGAGATTAGTCTGAAGGGTGTTCGAATGAAAAAGGATCACATTTTGACTGATGAGATTAAAGAACTACACCAAAAGGGAACACTTGTCCATCAAGAAAACGTAGAACTCCATAAAAAGATGGACTTCATCCAGAAAGAAAATGCCGAGCTGCAAAAGAAGGTAAATGAACAAAATGTGGCATCCAATCTTTCATGCACTATCAGAAATGGATATGATTTACATGCACCTATCAGCCTCCAGCTAAGCCAGCCGCAGTCTCAATACAGTGAACCAGCAACAAAAGCCATGAAATTAGGATTACAGCTGCATTAG 702 0.3946 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYDYSSTSMKAVIERYNKQKEEQHQLMNPASEVKFWQTEAAGLRQQLQYLQESHRQLMGEGLSGLGIKELQNLENQLEISLKGVRMKKDHILTDEIKELHQKGTLVHQENVELHKKMDFIQKENAELQKKVNEQNVASNLSCTIRNGYDLHAPISLQLSQPQSQYSEPATKAMKLGLQLH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10692 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g10692 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g10692 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g10692 233 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vifa1g10692 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g10692 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g10692 233 Coils Coil 120 140 - -
Vifa1g10692 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vifa1g10692 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g10692 233 FunFam AGAMOUS-like 21 13 87 - -
Vifa1g10692 233 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g10692 233 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vifa1g10692 233 Coils Coil 163 190 - -
Vifa1g10692 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Vifa1g10692 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g10692 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10692 Vifa-Chr1 1797279020 1797294836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10692 1 233 MADS-box Gene Family AT2G14210 62.447 1.02e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g10692 K-box 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10692 K09264 - gmx:100805092 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10692 1 1797279020 1797294836 Vifa1g10692 1 1797279020 1797294836 ECH