Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10679 ATGGAGAACTATTCATACCAATCATACCCAGATTCAGGAGAATCTTCACCTCGTTCTAGAGAAATCGACTTCGAAAACCCACCCAATCCAATCCCATGGGACGAACAACAACAACAACATCAACAGCAACAAAGTAGTAACTACAAAGCCAAGTTCATGTGTAGCTACGGTGGCAAGATCCAACCACGAACACACGACAATCAACTCTCTTACGTTGGTGGCGAAACCAAAATCCTAGCCGTTGATCGCAACATCAAATTCTCCTTAATGATCTCTAAACTCTGTTCTCTCATCGAAGCACCTGATGTTTCGTTTAAGTACCAACTCCCTGGCGAGGATCTCGATGCTCTTATTTCTGTGACCAACGACGATGATCTCGACCACATGATGCATGAATATGATCGTCTCTACCGTGCTTCCGCTAGACCCGCACGCATGCGATTATTCCTCTTTGTTAACGAGTCTGATTCTGCTCCAAACAATTCAAACCAACCCGACCCCGTTAAACCTTCCAACGTTGATTATCTGTTTGGAATCGAAAAGCCTGTCGCCGTCGTTGCTCCGACTCCGGTCCCCGTGCCGGAACATGTTGCTCCACCACCTGAGTATCTTACTCGACCGGGTTTGAATTTGAATCCATCTGATCCTGGTTTGAACCACCCCTTGAGGCAGTTTCAGCGGATGCAGATAGCGGAGAACGAGCAAAATGCGTATAGGAGAAAAAGTGAAGATAACCACCTTGTCGGAAATTATCCTCCTGGTCCCGGAGATTATTACGTTCAGAAGACGCCTGAGAAATTTCCGGTGACGAACTTCGTTCCACCACCGCAGCAGCATCACACTGGTTATTGGCAGGAAAAGCCTGTTTCCGGCGAGGCTTATCCACCGGTTGCTACTGGAGGAGGTGACCAGCCTCAGCCTGTTTATATGGTACCAGCGCCGGGAAATTACTATCATGCGCCGGTGAGTCAAGGATACTACGCGGTGCAGAGAATGCCATCTGATGGTTACCGTGAAGCGCAGGTTTACGGCGGCGCTCCGCCTCCAAAAGTGTCGGCGACTTATGCAGCGGCGCAACCGGTTAAAGGTCCTGCGTATGCGGAAGGTGTTAGTGTGGTTCGATCAACTGGGATACCGGATCATACTCCAGGTTCGTACGCACAGGTGGCGTATGATAGTGGCAGTGGGAGACAGGTTTATTTTAATGCGCCGGGTGGGGTAGTACACGCTCCACCGTATCAAGGAGTTGCTGCACCCGTCACCACAGATGTTAAAGTGATGAGCAAGATTTCTCAAGGTTCAGTGTGA 1308 0.4939 MENYSYQSYPDSGESSPRSREIDFENPPNPIPWDEQQQQHQQQQSSNYKAKFMCSYGGKIQPRTHDNQLSYVGGETKILAVDRNIKFSLMISKLCSLIEAPDVSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFVNESDSAPNNSNQPDPVKPSNVDYLFGIEKPVAVVAPTPVPVPEHVAPPPEYLTRPGLNLNPSDPGLNHPLRQFQRMQIAENEQNAYRRKSEDNHLVGNYPPGPGDYYVQKTPEKFPVTNFVPPPQQHHTGYWQEKPVSGEAYPPVATGGGDQPQPVYMVPAPGNYYHAPVSQGYYAVQRMPSDGYREAQVYGGAPPPKVSATYAAAQPVKGPAYAEGVSVVRSTGIPDHTPGSYAQVAYDSGSGRQVYFNAPGGVVHAPPYQGVAAPVTTDVKVMSKISQGSV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10679 435 Pfam PB1 domain 65 152 IPR000270 GO:0005515
Vifa1g10679 435 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g10679 435 MobiDBLite consensus disorder prediction 1 47 - -
Vifa1g10679 435 MobiDBLite consensus disorder prediction 31 47 - -
Vifa1g10679 435 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 69 153 - -
Vifa1g10679 435 PANTHER OS05G0427100 PROTEIN-RELATED 9 329 - -
Vifa1g10679 435 Gene3D - 70 153 - -
Vifa1g10679 435 CDD PB1_UP2 53 151 - -
Vifa1g10679 435 SUPERFAMILY CAD & PB1 domains 65 160 - -
Vifa1g10679 435 SMART PB1_new 64 153 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10679 Vifa-Chr1 1794482603 1794483910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10679 48 151 MAP Kinase Kinase Kinase AT5G57610 49.038 4.98e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10679 - - var:108341806 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10679 1 1794482603 1794483910 Vifa1g10679 1 1794482603 1794483910 ECH
Vifa1g10679 1 1794482603 1794483910 Vifa1g10679 1 1794482603 1794483910 PCT