Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10672 ATGAGTTCTCATATGGAAATTTCATCAATCAGAGGGTTACCTGAATTAGGAGTAATAGAGGATCCTAGCTATCTACATCAATGGAATAATCACTTAAATTCTATTGATACAAATAACTTAAGTGCTTCTGACTTTGGAGATGCTTTACAGAAACACTTTTTGTCAAATGATCAAAACTTCAACAACAAAACATGCATGGGAGTTTCTGAAAGAGCGGCGAAACAGCTTAAGAATAACAGCTGGAATTACAACAGCAGTAATCTTCAAACATCAGAAACACAGTTTGCGAATCTTCTTTCGTTTGCTGATTCGAGTTATGCGAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGATGGTTAGTCCGAAAATCAATAATAGTAGTACTACTATTGCAAACATGTTGATGAATCAAGGTAACTTGTTGGAGAATCAACAAAACCATGTCTTTAAGGCTTTTCATGAGGCTAAAGATGTTGAGACTCGTCCTAGTAAACTTTCTCAAGCTCATGATCACATTGTAGCTGAAAGGAAGCGTCGTGAGAAGCTTAGCCAGCGATTTATCGCTCTATCGGCTCTTGTTCCAAACCTAAAGAAGATGGATAAAGCTTCTGTTCTTGGAGAAGCTATAAGATACTTGAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAGAAGAGGAAGAAAACTGTGGAATCTGTTGTAATTGTGAAGAAATCTAGACTTTCTTATGATGCTGAAGACTCTTGTTCAGATAATGATAATACATTTGATGAAACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTTCTCATAAGACTTCATTGTTTGAAAAGTCAAGGAGTTATAGAGAAAACAGTGAGTGAAATAGAGAAACTTCATCTAAAAGTCATCAATAGCAGTGTCTTGACTTTTGGGAATTTCACCCTTGATATAACCATTATTGCTCAGATGGATGTTGGATTTTGCATGACATTGAAGGAACTTGTGAGAAAGCTACGTTCAGCTTATTCATCTTTCATGTGA 1044 0.3621 MSSHMEISSIRGLPELGVIEDPSYLHQWNNHLNSIDTNNLSASDFGDALQKHFLSNDQNFNNKTCMGVSERAAKQLKNNSWNYNSSNLQTSETQFANLLSFADSSYANQLGLLKPKSEMMVSPKINNSSTTIANMLMNQGNLLENQQNHVFKAFHEAKDVETRPSKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSRLSYDAEDSCSDNDNTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKTVSEIEKLHLKVINSSVLTFGNFTLDITIIAQMDVGFCMTLKELVRKLRSAYSSFM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10672 347 Coils Coil 207 234 - -
Vifa1g10672 347 PANTHER BHLH TRANSCRIPTION FACTOR 41 344 - -
Vifa1g10672 347 Pfam Helix-loop-helix DNA-binding domain 173 218 IPR011598 GO:0046983
Vifa1g10672 347 SMART finulus 174 223 IPR011598 GO:0046983
Vifa1g10672 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 231 IPR036638 GO:0046983
Vifa1g10672 347 Gene3D - 165 240 IPR036638 GO:0046983
Vifa1g10672 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10672 Vifa-Chr1 1793349602 1793351243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10672 168 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.676 8.94e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g10672 HLH 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10672 - - gmx:100798018 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10672 1 1793349602 1793351243 Vifa1g10672 1 1793349602 1793351243 ECH
Vifa1g10672 1 1793349602 1793351243 Vifa1g10672 1 1793349602 1793351243 PCT