Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10670 ATGTTCACCGGAGCACTTCTCCGTCACGGTTCACCACCGTCCATTTTTCTCACCACTCTCTTTCTCCTTTCCCTCATCACCCTCTCTCACTCAAACGAACTTCAATCTCTCATCAACTTCAAATCCTCCATCCAAACTTCCAATCCAAACATCTTCACTTCATGGAACCCTTCAAATTCACCCTGCAACTTCACCGGAATCATCTGTAACACCAAAGGCTCCGTTACAGAAATCAACCTTCCAATGAAGAATCTCACCGGCACTATTCCATTTGATTCACTATGCAAACTTGAATCTCTTGAGAAAATCTCTTTAGAATCCAACTTTCTGAAAGGAACCATAACTGAAGATTTGAAGAGTTGCATAAACTTGAAGTACTTAGATTTAGGTGGAAACTCATTCACTGGAACAGTACCTGAATTTTCATCTTTGAACAAGTTAGAGTACTTGAACCTTAATCTAAGTGGAGTTTCTGGTAAATTTCCATGGAAATCATTGGAAAATCTAAAAACTCTCACTTTCTTAAGCCTTGGTGATAACTTATTTGAAAAAGCTTCTTTTCCTTTGGAGATTCTAAACCTTGAGAATCTGTATTGGCTTTATCTAACCAATATCAGCATCTTTGGGAGAATTCCAATAGGTATTGGAAATCTCACACAGCTTCAGCATTTTGAGATTTCTGACAACAATTTATCTGGTGAGATTCCACATGATATTGGAAAGCTTAAGAATCTAAGGCTACTTGAGATATATGATAACAATTTGAGCGGGAAAATCCCGTTTGGATTCGGCAACCTTACCAATCTTGTTCAGTTCGATGCTTCGAATAATCACCTTGAAGGTGATCTTTCTGAGATAAAGTGGTTGAAGAATCTTCAATCCTTGCAGCTTTTTCAGAACAGATTCTCAGGAGAGATTCCACAAGAGCTTGGTGATTTTAAGTATCTTACAGAACTTTCTCTTTATGATAACAAACTCACTGGTTTTCTTCCGCAAAAGCTCGGTTCTTGGGATGGAATGGAATTTATAGATGTTTCAGATAACTCACTTTCTGGTCCTATTCCACCTGATATGTGCAAGAACAATCAAATGACTGATATAGCACTTTTGAATAACAGTTTCACAGGAAGTATACCAGACAACTATGCAAATTGCACTGCTTTGGAACGTTTTCGATTAACAAAGAACTCTCTTTCAGGTGTTGTTCCTAAAGGTATATGGGGTTTACCAAATTTGGAAATTGTTGATCTTGGAAGGAACCAATTTGAAGGTTCAATAGCTTCTGATATTGGCAAAGCTAAATCTCTAGCTCAGCTTTTTTTATCTGATAACCAATTCTCAGGTGAGTTACCTTTGGAAATCTCAGAAGCTTCTTCTTTGGTTTCGATTCAGTTAAGTTCGAATCGAGTTTCTGGTCACATACCAGAAACTATAGGCAAGTTGAAGAAACTAACCAGTCTTACTTTGAATAACAACAATCTTTCTGGTATTCTACCAGATTCTATTGGTTCTTGTGTTTCTCTTACCGAACTAAACCTTGCTGAAAATTCAATTTCTGGTGTAATTCCAACTAGTATTGGTTCTTTTCATACACTTAATTCATTGAATTTGTCAAACAATCAGTTTTCTGGTGAGATTCCGTCGAGTTTATCGTCTCTTAAACTTAGCCTTCTTGATTTATCAAACAATCAGTTTTTTGGTTCTATACCAGACTCACTTGCTATTTCAGCTTTCAAAGATGGTTTCATGGGAAATCCTGGTTTGTGTAGCCAGATTTTGAAGAATTTTCAACCATGTTCAGTGGAATCTGGTGCCTCAAGGCAAGCTCGAAACCTCGTGTTCTTTTTCATTGCTGGTTTAGTGGTTCTGATTCTTTCATTATCATATTTCCTCTTCATGAGACTTAAGCAGAAGAACAAGTTCGAGAAGCAAGTGCTCAAGACTAATTCTTGGAAGTTCAAGCAATACCATGTGTTAAACATCAATGAGAATGAAATTATTGAAGGAATCAAAGCTGAGAATGTGATTGGAAAAGGAGGGTCGGGGAATGTTTACAAAGTAGAGCTAAAAAGTGGCGAAGTTTTCGCAGTCAAACACATATGGACTTCGAATCCAAGAAGTGATTATAGGAGCAGTTCAGCAATGCTAAAAAGGAGTTCAAGTTCGCCCGAGTATGATGCCGAGGTTGCAACTTTGAGTTCTGTAAGGCATGTGAATGTGGTGAAGCTATATTGTAGTATCACAAGTGAAGACAGCAGTTTGCTTGTTTACGAGTTTTTACCGAATGGTAGTTTGTGGGAAAGGTTGCATGCTTGTAAGAAGACTCAGATGGGGTGGGAGGTTCGGTACGATATTGCATTGGGTTCAGCTAGAGGTTTGGAGTATTTGCATCATGGTTGTGATAGACCTGTTATGCATAGGGATGTTAAGTCAAGTAACATATTGCTCGATGAGGAATGGAAGCCGAGGATCGCTGATTTTGGACTTGCGAAGATCGTGCATGGAGGAGCTGGTAATTGGACTCATGTCATTGCTGGAACACTCGGCTACATGGCTCCTGAATATGCCTACACTTGTAAGGTCACGGAGAAGAGTGATGTTTACAGTTTTGGTGTAGTACTGATGGAGTTAGTAACAGGGAAGAAGCCTGTCGAGCCGGAGTTTGGAGATAATAAGGATATTGTCAGTTGGGTATGCAGTAACATTAGGAGCAAAGAAAGTATACTTGAATTGGTGGATTCTACGATCGCAAAGCATTTCAAAGAAGATGCTGTTAAGGTGTTGAGAATCGCAATGTTGTGCACGGCAAAAGCTCCATCTTCTAGACCATCAATGAGAACGTTGGTTCAAATGCTGGAAAACGCGGATCCATCTACTTCGTCTAAAGTTATTGTTACCATAAATTAG 2907 0.3887 MFTGALLRHGSPPSIFLTTLFLLSLITLSHSNELQSLINFKSSIQTSNPNIFTSWNPSNSPCNFTGIICNTKGSVTEINLPMKNLTGTIPFDSLCKLESLEKISLESNFLKGTITEDLKSCINLKYLDLGGNSFTGTVPEFSSLNKLEYLNLNLSGVSGKFPWKSLENLKTLTFLSLGDNLFEKASFPLEILNLENLYWLYLTNISIFGRIPIGIGNLTQLQHFEISDNNLSGEIPHDIGKLKNLRLLEIYDNNLSGKIPFGFGNLTNLVQFDASNNHLEGDLSEIKWLKNLQSLQLFQNRFSGEIPQELGDFKYLTELSLYDNKLTGFLPQKLGSWDGMEFIDVSDNSLSGPIPPDMCKNNQMTDIALLNNSFTGSIPDNYANCTALERFRLTKNSLSGVVPKGIWGLPNLEIVDLGRNQFEGSIASDIGKAKSLAQLFLSDNQFSGELPLEISEASSLVSIQLSSNRVSGHIPETIGKLKKLTSLTLNNNNLSGILPDSIGSCVSLTELNLAENSISGVIPTSIGSFHTLNSLNLSNNQFSGEIPSSLSSLKLSLLDLSNNQFFGSIPDSLAISAFKDGFMGNPGLCSQILKNFQPCSVESGASRQARNLVFFFIAGLVVLILSLSYFLFMRLKQKNKFEKQVLKTNSWKFKQYHVLNINENEIIEGIKAENVIGKGGSGNVYKVELKSGEVFAVKHIWTSNPRSDYRSSSAMLKRSSSSPEYDAEVATLSSVRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHACKKTQMGWEVRYDIALGSARGLEYLHHGCDRPVMHRDVKSSNILLDEEWKPRIADFGLAKIVHGGAGNWTHVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKKPVEPEFGDNKDIVSWVCSNIRSKESILELVDSTIAKHFKEDAVKVLRIAMLCTAKAPSSRPSMRTLVQMLENADPSTSSKVIVTIN 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10670 968 Gene3D Ribonuclease Inhibitor 187 239 IPR032675 -
Vifa1g10670 968 Pfam Leucine Rich Repeat 532 553 IPR001611 GO:0005515
Vifa1g10670 968 Pfam Leucine Rich Repeat 123 141 IPR001611 GO:0005515
Vifa1g10670 968 SMART LRR_typ_2 409 433 IPR003591 -
Vifa1g10670 968 SMART LRR_typ_2 218 242 IPR003591 -
Vifa1g10670 968 SMART LRR_typ_2 481 504 IPR003591 -
Vifa1g10670 968 SMART LRR_typ_2 289 313 IPR003591 -
Vifa1g10670 968 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 215 954 - -
Vifa1g10670 968 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Vifa1g10670 968 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa1g10670 968 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
Vifa1g10670 968 Gene3D Ribonuclease Inhibitor 240 314 IPR032675 -
Vifa1g10670 968 ProSiteProfiles Protein kinase domain profile. 670 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10670 968 Gene3D Phosphorylase Kinase; domain 1 652 759 - -
Vifa1g10670 968 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 760 966 - -
Vifa1g10670 968 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Vifa1g10670 968 SUPERFAMILY Protein kinase-like (PK-like) 663 953 IPR011009 -
Vifa1g10670 968 Gene3D Ribonuclease Inhibitor 315 600 IPR032675 -
Vifa1g10670 968 FunFam Receptor-like protein kinase HSL1 291 597 - -
Vifa1g10670 968 SUPERFAMILY L domain-like 290 596 - -
Vifa1g10670 968 FunFam Receptor-like protein kinase HAIKU2 653 759 - -
Vifa1g10670 968 CDD STKc_IRAK 676 954 - -
Vifa1g10670 968 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Vifa1g10670 968 Pfam Protein kinase domain 673 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10670 968 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Vifa1g10670 968 SUPERFAMILY L domain-like 30 356 - -
Vifa1g10670 968 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
Vifa1g10670 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Vifa1g10670 968 SMART serkin_6 670 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10670 Vifa-Chr1 1792836882 1792839920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10670 17 966 Receptor kinase-like Gene Family AT1G09970 56.322 0.0 1058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g10670 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10670 - - lja:Lj4g3v1120510.2 1387.09