Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10643 ATGAGAACCTTAAGAAGCTTCGATGGCTTCCCTTTAAATTTGAGCAACTTCTATGGTGGCTGCGTTATTCTTCTTCTTCTTCTTGTTGTTGTTACTTTATTGTTTCTTCTGAACCGTAAGAGCAGATCCCTGTTGGCGTCCTCTTTGATCTCCGATTCTAGCAATTTAAACCCAAGGGTTTACAATTGCAGAACCTCAAACACTGATGTCATAGATAAAACAAATCATCATCTATGCTACAAAGCTAAATCCACCAAACCTAAGAATGGTCCCCTGAAATATTGGAGTATGACTGTGTTCAATGATATTTCCGCCGAGATGCTAAGAAACTTCTACATGGACAATCACTACAGAAAGCAATGGGATAACACTGTGGTCGAACACAATCAGTTGCAGCTGGATGAATCTGATGGTTCTGAAGTTGGTCGTACAGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGTTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGGAAGTAGATTAA 1011 0.4293 MRTLRSFDGFPLNLSNFYGGCVILLLLLVVVTLLFLLNRKSRSLLASSLISDSSNLNPRVYNCRTSNTDVIDKTNHHLCYKAKSTKPKNGPLKYWSMTVFNDISAEMLRNFYMDNHYRKQWDNTVVEHNQLQLDESDGSEVGRTGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGVVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPEVD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10643 336 PANTHER ALCOHOL DEHYDROGENASE 142 334 - -
Vifa1g10643 336 Gene3D - 269 334 - -
Vifa1g10643 336 Pfam Alcohol dehydrogenase GroES-like domain 147 249 IPR013154 -
Vifa1g10643 336 FunFam alcohol dehydrogenase 1-like isoform X1 123 268 - -
Vifa1g10643 336 SUPERFAMILY Bet v1-like 85 144 - -
Vifa1g10643 336 FunFam S-(hydroxymethyl)glutathione dehydrogenase 269 336 - -
Vifa1g10643 336 Gene3D - 140 268 - -
Vifa1g10643 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 255 333 IPR036291 -
Vifa1g10643 336 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 155 169 IPR002328 GO:0008270|GO:0016491
Vifa1g10643 336 SUPERFAMILY GroES-like 146 273 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10643 Vifa-Chr1 1789953257 1789954998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10643 150 331 Monolignol Biosynthesis Gene Families AT1G72680 27.322 1.58e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10643 K18857 - gmx:100801918 356.295