Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10639 ATGAGAACCTTAAGAAGCTTCGATGGCTTCCCTTTAAATTTGAGCAACTTCTATGGTGGCTGCGCTATTCTTCTTCTTCTTCTTGTTGTTGTTACTTTATTGTTTCTTCTGAACCGTAAGAGCAGATCCCTGTTGGCGTCCTCTTTGATCTCCGATTCTAGCAATTTAAACCCAAGGGTTTACAATTGCAGAACCTCAAACACTGTCACTGATGCTGATTTGAAGTTTTTAATGGATGAAATTCTAAATCAGAACTATAAATGGGAGGATGTCATAGATAAAACAAATCATCATCTATGCTACAAAGCTAAATCCACCAAACCTAAGAATGGTCCCCTGAAATATTGGAGTATGACTGTGTTCAATGATATTTCCGCCGAGATGCTAAGAAACTTCTACATGGACAATCACTACAGAAAGCAATGGGATAACACTGTGGTCGAACACAATCAGCTGCAGCTGGATGAATCTGATGGTTCTGAAGTTGGTCGTACAGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATTTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACATAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAAGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGTTGTTGGCCTTGCTATATGTTATTACTCTTATATCTTTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGGAAGTAGATTAA 1098 0.4162 MRTLRSFDGFPLNLSNFYGGCAILLLLLVVVTLLFLLNRKSRSLLASSLISDSSNLNPRVYNCRTSNTVTDADLKFLMDEILNQNYKWEDVIDKTNHHLCYKAKSTKPKNGPLKYWSMTVFNDISAEMLRNFYMDNHYRKQWDNTVVEHNQLQLDESDGSEVGRTGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYIVVHAGCVAKINPEAPLDKVCILSCGICTSLGATVNVAKPKPGSSVAIFGLGVVGLAICYYSYIFAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPEVD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10639 365 ProSiteProfiles START domain profile. 88 162 IPR002913 GO:0008289
Vifa1g10639 365 Pfam Alcohol dehydrogenase GroES-like domain 168 270 IPR013154 -
Vifa1g10639 365 SUPERFAMILY Bet v1-like 71 157 - -
Vifa1g10639 365 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 176 190 IPR002328 GO:0008270|GO:0016491
Vifa1g10639 365 Gene3D - 161 289 - -
Vifa1g10639 365 PANTHER ALCOHOL DEHYDROGENASE 163 363 - -
Vifa1g10639 365 Gene3D - 290 363 - -
Vifa1g10639 365 FunFam alcohol dehydrogenase 1-like isoform X1 144 289 - -
Vifa1g10639 365 SUPERFAMILY GroES-like 167 293 IPR011032 -
Vifa1g10639 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 276 362 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10639 Vifa-Chr1 1789929527 1789931268 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10639 171 307 Monolignol Biosynthesis Gene Families AT1G72680 28.261 2.41e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10639 K18857 - gmx:100801918 351.673