Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10621 ATGGCTTCCCGGAACCAGAACCGGCCACCGCGAAGTCCCTCCACGATGCATAAGAAAGGGGTAGGTGCTGAGGAAATTCCGTCAGACAAGCGGAGAAGGATTGGTGGTGAAAAATTGGTGGGACTGGGTAGAGGTAGGGCTCCATTTGGTGCACTCAACAACAAATCGGAAGTCAATGAAGTTAGCAGCGGCGGCGGTGGTGGTTCTGATGGATCTGAAGGTAGCGTAGTTGATTTCACTGAAGAGGAAGTAGATGCGTTGTTGGAAGAGAGGATGAAAAAGGGGATTCCTCGAGATACTAAAAAAAAAATGGAGAATATGGTGGATCTTATCAAGAGACTTAAGCAATGTGTAAGGTGGTTTAAGGGAAAGAAAGAAAAGCTTCAGGCAGATCTTGAATCGGCTGAAAAGAAATGCATTGAGACCGAGAATGAGATGAAAGCTAAGATAGACGAATTGGATGAGGCTATCTCAAATTTGAGGACGACGATTTCCTCTTTAGAAGAGAAGATTGCAAAGGATGAATTAGATAGACAGGAAGTGATTGAATGTTTTAGAAAAGAAAAAGAGGCCAGAAATGCAGCTGAGCAGATGAACATTTCTCTTTCAACTGAACTTGAGAAAGTTTGTGATGAGAAATCAGCTATTGAGCGGAAGGCCACTGCAACTGAGGACCTGTACAAACGATCGCAAGAGTACAATATCAGTTTGCAGCAGTACAATAGTCGCCTTCAGTCAAATCTGGAAACAGTTAACGAGGCACATAAACGACTGGAAACAGAGAAATCAAGTATTGTTGAGAACCTTAGCAATGCAAGAGGCCACAATAAGGCATTGCAAGAGCAGCTGGCATCTCTGAAAACTTCACAAGACGAGGCTACAAAGGGGAAAGACATGTTAGCCAGTGAACTCAAATTCCTCCGAGATGAATTAAAACAAGTTAGAGACGACCGTGATCACCAAGTTGGACAAGTACAAGCTTTAACCGGAGAAGTAGCCAAATACAAGGAATATACAGGGAAATCAAGTGAACAACTGGATACATTGACGGTTAAAACAAGTGCTCTCGAGGAGATATGTACTTCACAAAGACAACAAATAGATATGTTGCAGCAGCAGTTGACGGCTGAAAGAGAGAAGTTGAAGATGGCTGATTTATCTTTTTCAGAAACAAGAGCAGTGTTTGAAAAACAGGAAACAGTTATAAGTCAACTACGAGATAGATTGGCTGAAAAAGAATTACAAGTAATTGAAGGAGAGTCATTACGAAAGAAATTGCACAACACTATTCTGGAATTAAAAGGAAATATCCGTGTGTTCTGCCGTGTCCGACCTTTGTTACCGGATGATGGTCCTGCAGCAGACATGGTAGTTTCTTTCCCTTCATCAACAGAAGCTCTTGGCCGGGGCATTGAATTGGCACAGAGCGGGCAGAAGTATTCTTTTTCATTTGACAGAGTATTTAATCAAGAGGCTTCTCAGGAGGATGTTTTCACAGAGATTTCACAGCTTGTACAAAGCGCACTTGATGGGTACAAGGTTTGTATTTTTGCTTACGGACAAACAGGTTCTGGAAAAACCTATACGATGGTTGGCAGGCCTGGTCTCCCTGAGCTGAAAGGCTTGATACCGCGTTCACTTGAACAAATATTCCTGGTTAGTCAATCTTTGAAAGGTCAAGGTTGGAAGTACACTATGCAGGCCTCGGTACTTGAAATATACAACGAGACGATAAGGGATTTGTTAGCACCAACAGAAAATCCTGGAAAAAAGTACAATATTATACACGATGCCAATGGAAAAAACACATATGTTCCTGACCTGACTATTGTGGACGTGTGCGGTGCAGATGAGATTTCCACTCTCCTACAACGGGCTGCACAAAGCAGATCAGTAGGAAGAACACAGATGAATGAACAATCGTCACGAAGTCACTTTGTCTTTACTCTGCGCATAAGCGGCATTAATGAGAACACCGAGCAACAAGTTCAAGGTGTGCTAAACCTGATCGATCTTGCTGGAAGTGAAAGACTTTCGAAAAGTGGAGCAACTGGGGACCGTTTGAATGAAACTAAGGCGATAAACAAAAGTCTTTCCTGTTTGAGTGATGTCATTTTTGCGTTGGCGAAAAAAGACGATCATGTCCCCTTCAGGAATTCTAAGCTAACAACCCTTCTCCAGCCATGTCTTGGTGGAGATTCAAAGACTCTGATGTTTGTAAATATTTCGCCTGACCCAACTTCAACAGGAGAGTCACTTTGTTCTCTTCGTTTTGCCTCAAGAGTAAATAGTTGCGAGATTGGTATTCCTCGGCGCCAGACATCCATGAAGTCCTCTTCCGATTCTCGTTTGAGCTATGGCTAA 2364 0.4281 MASRNQNRPPRSPSTMHKKGVGAEEIPSDKRRRIGGEKLVGLGRGRAPFGALNNKSEVNEVSSGGGGGSDGSEGSVVDFTEEEVDALLEERMKKGIPRDTKKKMENMVDLIKRLKQCVRWFKGKKEKLQADLESAEKKCIETENEMKAKIDELDEAISNLRTTISSLEEKIAKDELDRQEVIECFRKEKEARNAAEQMNISLSTELEKVCDEKSAIERKATATEDLYKRSQEYNISLQQYNSRLQSNLETVNEAHKRLETEKSSIVENLSNARGHNKALQEQLASLKTSQDEATKGKDMLASELKFLRDELKQVRDDRDHQVGQVQALTGEVAKYKEYTGKSSEQLDTLTVKTSALEEICTSQRQQIDMLQQQLTAEREKLKMADLSFSETRAVFEKQETVISQLRDRLAEKELQVIEGESLRKKLHNTILELKGNIRVFCRVRPLLPDDGPAADMVVSFPSSTEALGRGIELAQSGQKYSFSFDRVFNQEASQEDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMVGRPGLPELKGLIPRSLEQIFLVSQSLKGQGWKYTMQASVLEIYNETIRDLLAPTENPGKKYNIIHDANGKNTYVPDLTIVDVCGADEISTLLQRAAQSRSVGRTQMNEQSSRSHFVFTLRISGINENTEQQVQGVLNLIDLAGSERLSKSGATGDRLNETKAINKSLSCLSDVIFALAKKDDHVPFRNSKLTTLLQPCLGGDSKTLMFVNISPDPTSTGESLCSLRFASRVNSCEIGIPRRQTSMKSSSDSRLSYG 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10621 787 CDD KISc_C_terminal 434 767 - -
Vifa1g10621 787 Gene3D Kinesin motor domain 378 767 IPR036961 -
Vifa1g10621 787 Pfam Kinesin motor domain 442 764 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g10621 787 Coils Coil 395 415 - -
Vifa1g10621 787 ProSiteProfiles Kinesin motor domain profile. 436 765 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g10621 787 MobiDBLite consensus disorder prediction 22 39 - -
Vifa1g10621 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 764 IPR027417 -
Vifa1g10621 787 PRINTS Kinesin heavy chain signature 511 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g10621 787 PRINTS Kinesin heavy chain signature 635 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g10621 787 PRINTS Kinesin heavy chain signature 666 684 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g10621 787 PRINTS Kinesin heavy chain signature 715 736 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g10621 787 MobiDBLite consensus disorder prediction 1 76 - -
Vifa1g10621 787 PANTHER KINESIN-LIKE PROTEIN KLP-3 281 776 IPR027640 GO:0003777|GO:0007018
Vifa1g10621 787 Coils Coil 241 289 - -
Vifa1g10621 787 ProSitePatterns Kinesin motor domain signature. 665 676 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa1g10621 787 MobiDBLite consensus disorder prediction 55 69 - -
Vifa1g10621 787 Coils Coil 118 177 - -
Vifa1g10621 787 Coils Coil 297 317 - -
Vifa1g10621 787 Coils Coil 360 380 - -
Vifa1g10621 787 FunFam Kinesin-like protein 382 767 - -
Vifa1g10621 787 SMART kinesin_4 434 773 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10621 Vifa-Chr1 1788757862 1788763572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10621 408 777 Calmodulin-binding Proteins AT5G65930 39.842 5.94e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10621 K10405 - gmx:100808278 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10621 1 1788757862 1788763572 Vifa1g10621 1 1788757862 1788763572 ECH
Vifa1g10621 1 1788757862 1788763572 Vifa1g10621 1 1788757862 1788763572 PCT