Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10619 ATGGCGCCTCCAAAGAAACTCCGCCCTACTCCGCTCGAAGATCCACCCACCGCCTCCTCCTCCGATGAAGACGACCAACCACCTCCACTCAAAAAGCCAGAAGATGAAGTAGTCGATGAAGAAGAAGATTCATCCGAAGAAGGAGAAGAAAAAACTGATGAAGATGAAGATGAAGGTTCTTCATCCGAAGAAGAGGAACAAGTTCAACCTACACCTCCTTCACAACCTGCTTCCAAAAACCCTAAACCCGAATCTGGTTCCGAATCCGAATCTGGTTCTGGTTCTGGATCAGAATCTGGATCCGAATCTGATACTGAACAAGAACCTACTCCACCTAACGCCAAAGTCAAGCCTCTCGCATCAAAGCCCATGAAAGCCCAACCACAAGCCCAAGCCACTCCTGTACCGGCCAGATCTGGAACTAAGCGTCCAAACGAGAACGATGCTAAACGTGCTAAGAAGAAAACCACCGCCGCCGCCGGCGGTTCCGAGAACGAGGCGGATGGAGACGGTGACGTGAAAATGACCGGTGAAGACTCTAAGAAGATGTATCAGAGAGTCTTCACCGAAGAAGATGAGATCGCCATTCTCAAAGGTCTTGCTGAGTTCATTTCCAAAACTGGAAAGGATCCGATGAAGGACCCGGTCGGATTTCATAGTTTTGTGAGAAAGTCTATTCATGGTGATGCTACCAGCGAACAACTGAAGCGGAAGGTTCGTGGTCTGAAGATGAAGTTCAAATCCGGTGCTAGCTTCACTAGAGAGCACGATAAGAAAGCTTTTGAACTTTCCAAGAAGGTTTGGGATGATAATGGAGTCATTGAAGGTGAAGAGAATGAGAAAGTGAATGAGAAAACTCCCAAGAGTGCTAAGAAGGAAGCTCCTATCAGAAATAATGGTTCTGCTAAGAAAGAAGTAGTTGCCAAAAAGGGTGCTGGGAAAGATGAGAGTAATGTTGATAAAAGCCTGGCTTTGAGTGAAATGTATAATTTTGGTGAAGCTGCGGGGTTGTCCTCCTTGAACAAGGATGCCATGAAAAGGGGAATGGATTTGATGGCCGAATCTAAGGTAGATGAGTTTGATGAGAGATGGAGGAAGATTCAAATTGCGGAGATGGAAGTGTTTGTGGCTCGCGGGCAGCTGATTAAGGATCAGACTAGGATTGCATTGGCGGCATTTAAGAAATCAATCAATTAG 1197 0.4637 MAPPKKLRPTPLEDPPTASSSDEDDQPPPLKKPEDEVVDEEEDSSEEGEEKTDEDEDEGSSSEEEEQVQPTPPSQPASKNPKPESGSESESGSGSGSESGSESDTEQEPTPPNAKVKPLASKPMKAQPQAQATPVPARSGTKRPNENDAKRAKKKTTAAAGGSENEADGDGDVKMTGEDSKKMYQRVFTEEDEIAILKGLAEFISKTGKDPMKDPVGFHSFVRKSIHGDATSEQLKRKVRGLKMKFKSGASFTREHDKKAFELSKKVWDDNGVIEGEENEKVNEKTPKSAKKEAPIRNNGSAKKEVVAKKGAGKDESNVDKSLALSEMYNFGEAAGLSSLNKDAMKRGMDLMAESKVDEFDERWRKIQIAEMEVFVARGQLIKDQTRIALAAFKKSIN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10619 398 MobiDBLite consensus disorder prediction 126 140 - -
Vifa1g10619 398 MobiDBLite consensus disorder prediction 1 177 - -
Vifa1g10619 398 Pfam Protein of unknown function, DUF573 185 269 IPR007592 GO:0006355
Vifa1g10619 398 MobiDBLite consensus disorder prediction 36 64 - -
Vifa1g10619 398 MobiDBLite consensus disorder prediction 143 157 - -
Vifa1g10619 398 MobiDBLite consensus disorder prediction 278 317 - -
Vifa1g10619 398 PANTHER BNAANNG10740D PROTEIN-RELATED 41 390 IPR007592 GO:0006355
Vifa1g10619 398 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10619 Vifa-Chr1 1788191028 1788192224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10619 115 393 GeBP Transcription Factor Family AT4G25210 31.229 4.82e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vifa1g10619 DUF573 1.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10619 - - mtr:11424230 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10619 1 1788191028 1788192224 Vifa1g10619 1 1788191028 1788192224 ECH