Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10611 ATGGCTGAAGAATTTCAAGCTGGAATTTGTGGTGAAACATGGTGGAATATTAATAATTCAACAAGAAGTGTTTTTCCTCTTAAGATAAACTCATCATCATCATCATCATCATGTTCAGGGAGTTATAGTAACTGGCAAAATGAGTTTTTGGGTTTGAAAGAAACTAACAATAACTTTGATGTTTCTGATTGTTCTTTGAGTTTTCTCGATTCTCCGAAGCCGCAATTATCGGTTAATGGAACCGGTAGTACTAGTAGCATGTTCTTCGATCTATCGTCTCCGAATTCATCAAATTGGAATCACTCAATATTGTCAGAAAACAATTTTGAGTCTGTGATTCAAGAAGAAAGCACAAAGAATTTCTCATCTACAATGGAACAAGAATTTTGCATAGATCATCATCAGAGTTTGAATTCTGTAACAAGCACTGGTTTATCATCATATCCAATTGGATCACTTGATTCCTATGCTGAGGCTCTCAATGACATAAGAGCAGGAGTTTTGGCTTCATCACAATCACAATATCAATCTCATAATTTTCATGACAACAATTTCAGTTCCTCAAATACTCTATTAAACAAGCTAAAGAGAGAAAAGTCACCAGAAGCAAAGAGTTCATCTGAAGTTGGAGTAAAGAGGCAAAGAATTGAGACTCCATCACCATTACCAACTTTTAAGGTTAGGAAAGAGAAGCTAGGGGACCGTATAACAGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGATACAGCTTCTGTTCTTCATGAAGCCATTGATTACATCAAGTTTCTTCATGATCAAGTTCATGTTTTGAGCACTCCATATATGAAAAATGGTTCTCCTATTCAACACCAACAGGGTTCTGATAATGTGAAGGAGTTAGAAAGAAAAAAACAAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCAATTTCAAGCACATTTCCAATGACTAATGAGACTAGTGTTGATTTCTGGACACCTACATTTGGAGGTACACTCTTTGGAAGATAG 1017 0.3618 MAEEFQAGICGETWWNINNSTRSVFPLKINSSSSSSSCSGSYSNWQNEFLGLKETNNNFDVSDCSLSFLDSPKPQLSVNGTGSTSSMFFDLSSPNSSNWNHSILSENNFESVIQEESTKNFSSTMEQEFCIDHHQSLNSVTSTGLSSYPIGSLDSYAEALNDIRAGVLASSQSQYQSHNFHDNNFSSSNTLLNKLKREKSPEAKSSSEVGVKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVHVLSTPYMKNGSPIQHQQGSDNVKELERKKQDLRSQGLCLVPISSTFPMTNETSVDFWTPTFGGTLFGR 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10611 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 283 IPR036638 GO:0046983
Vifa1g10611 338 CDD bHLH_AtbHLH_like 222 273 IPR045239 -
Vifa1g10611 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
Vifa1g10611 338 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 317 - -
Vifa1g10611 338 Coils Coil 285 305 - -
Vifa1g10611 338 FunFam Transcription factor bHLH123 family 226 288 - -
Vifa1g10611 338 Gene3D - 226 307 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10611 Vifa-Chr1 1786782369 1786784662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10611 176 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 57.317 2.39e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10611 - - psat:127083163 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10611 1 1786782369 1786784662 Vifa1g10611 1 1786782369 1786784662 PCT