Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10608 ATGATGATCACAACAAACCATTGCCAAACCTTATTTTCGTTTGCCTGTCTGTCGTGTTTCTTTTGTTTCTGCTCAGAATTCTCATGTGCCGCTTCAACTTCCAGAGTCAGTATCAAACATGGTGATTTCATCAGAGACAAAGAAGGCGAAGTTTTAGTCTCCAATGGCTTCAACTTCGTAGTGGGTTTCTTCGGTTTTCAAAACTCTTCTTCTCGTTACGTTGGTATTTGGTACTACAGCATTCCTGGACCTCAAGTTATTTGGGTTGCAAACAGAAACAAACCCATCAACGGTAACGGTGGATCCATCACTATATCTACAAACGGCAATTTAGTCATTCTTGATGAAAACAAAACACAACTCTGGTCTACCAATGTTTCCATCATTGACAGCAACAAAAACAACTCCGAAGCTGTTCTTAAAGATAATGGTAATCTTGTTCTTTCAAATGGGAAAGTGGTGTTATGGGAAAGTTTTGAAAATCCAACTGATACTTATCTACCTGGTATGAAAGTTCCTGTGAATGGGAAGAGCTTTAACTTCACTTCATGGAAATCAAGTACAGATCCTTCATTAGGGAACCATACAATGGGAATTGATCCAGAAGGGTTACCACCACAGATAGTAGTTTGGGAAGGAGAGAAAAGAAAATGGAGAAGTGGTTATTGGGATGGTAGAGTTTTCACTGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTTCTTAATTTGGATAATAATGGAGGAGATAGGTACTTTGTTTATAATAATAAGTTGTTGTTGAATGGTACTAGTTCTGTGAGGTTTCAGATTGGTTGGGATGGTTATGAAAGAGAGTTTATTTGGAATCAAAATGAGAAAAATTGGACTGAGAAACAAAAAGGGCCTCATAATGAGTGGGAGGTTTATAACTTTTGTGGTGGTTTTGCAGCTCGTGATTTGTTGGTTTCGGGTTCGGCTACTTGTAGTTGCTTACAAGGGTTTGAACTAAAGGATAAAGGGAATTTGTCAGGTGGATGTAGGAGGATGACAGCATTGAAGGGCGAACAGAAGAATGGTAGTTTTGGAGAAGATGGTTTCATGGAGCTTAGGTGTATGAAGTTACCCGATTTCGCGAATTTGGTGGTACATACTACGGATTGTGAAGGTGATTGTTTGAAGAATGGTTCTTGCACTGCCTATGCAGAAGTTATGGGAATTGGTTGCATGGCTTGGTATGGAGAGTTGGTAGATCTTCAAACGTTCGAACATGGAGGGAATACATTGCACATTCGTCTTGCTCATTCTGATTTAGTTAATAACAAGAAGATAGTGATTCTGATAATATCAGCTGTTCTAGCAGGGCTAATCTCTCTAGGAATGTTTGTATGGTTGGTACGGATGAACAAGAGAAAACTCAAAGTTTCTACTGCTTCGCCTCGCAAAAATAGTGATATAATACCAATGTTTGATGCAAGAAAGAGCAGACAGATGTCTGCAGAGTTATCAGGATCAATTGAACTTAGTTTGGAAGGCAATCAACTAAGTAAAACTAAGATTCCATTTTACAATTTTATTTGCATGTCAGCAGCAACCAACAATTTTTCTGAAGAAAATAAGCTCGGACAAGGTGGTTTCGGTCCTGTCTACAAGGGAATGCTTCCGACCGGAGAAGAAGTAGCTGTTAAGAGGCTTTCAAGACGATCAGGCCAAGGGGAAGAAAAGTTGCTTGTATATGAATTCATGCCAAACAAAAGCTTGGATTGCTTTTTATTCGATCCTATTAAGCAAACACAATTAAATTGGGCGAGACGTTTTGAAATCATTGAAGGAATTGCAAGAGGACTACTCTATCTGCATCGTGATTCAAGACTTAGAATTATTCATCGTGATCTAAAAGCAAGTAACATTTTGTTAGACGAAAACATGAACCCAAAAATATCAGATTTTGGCTTAGCCCGGATATTCGCTGGAAATCAAAATGAAGCCAATACAACCAGAGTGGTTGGTACATATGGTTATATGTCTCCTGAATACGTTATGGAAGGCCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGTGTATTGCTACTAGAGATTGTGAGTGGCCGCAAAAACACTAGCTTTCGTCATTCAGATGATTCGAGTCTCATAGGTTATGCATGGCATCTTTGGAACGAACATAGAGCAATGGAACTTGTTGATGGTTGCATTCGCGATTCTTGCCCTAAAAACAAAGCATTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCAGGTCATAGACCAAACATGTCGAATGTTGTGTTGATGCTTGAGAGTGAAGCAACCACTCTTCCTTTACCTGTGCAGCCTTTGATTACTTCCATGAGGAGTTATGAAGACAGAGAATTTTACATGGATGGTCTTGATGTTTCAAATGATCTCACGGTCACAATGCTAGTAGGGAGATAG 2448 0.3909 MMITTNHCQTLFSFACLSCFFCFCSEFSCAASTSRVSIKHGDFIRDKEGEVLVSNGFNFVVGFFGFQNSSSRYVGIWYYSIPGPQVIWVANRNKPINGNGGSITISTNGNLVILDENKTQLWSTNVSIIDSNKNNSEAVLKDNGNLVLSNGKVVLWESFENPTDTYLPGMKVPVNGKSFNFTSWKSSTDPSLGNHTMGIDPEGLPPQIVVWEGEKRKWRSGYWDGRVFTGVDMTGSFLHGFVLNLDNNGGDRYFVYNNKLLLNGTSSVRFQIGWDGYEREFIWNQNEKNWTEKQKGPHNEWEVYNFCGGFAARDLLVSGSATCSCLQGFELKDKGNLSGGCRRMTALKGEQKNGSFGEDGFMELRCMKLPDFANLVVHTTDCEGDCLKNGSCTAYAEVMGIGCMAWYGELVDLQTFEHGGNTLHIRLAHSDLVNNKKIVILIISAVLAGLISLGMFVWLVRMNKRKLKVSTASPRKNSDIIPMFDARKSRQMSAELSGSIELSLEGNQLSKTKIPFYNFICMSAATNNFSEENKLGQGGFGPVYKGMLPTGEEVAVKRLSRRSGQGEEKLLVYEFMPNKSLDCFLFDPIKQTQLNWARRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFAGNQNEANTTRVVGTYGYMSPEYVMEGLFSVKSDVYSFGVLLLEIVSGRKNTSFRHSDDSSLIGYAWHLWNEHRAMELVDGCIRDSCPKNKALRCIHIGMLCVQDSAGHRPNMSNVVLMLESEATTLPLPVQPLITSMRSYEDREFYMDGLDVSNDLTVTMLVGR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10608 815 PIRSF SRK 565 815 IPR024171 GO:0004674
Vifa1g10608 815 PIRSF SRK 6 569 IPR024171 GO:0004674
Vifa1g10608 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vifa1g10608 815 Pfam D-mannose binding lectin 86 185 IPR001480 -
Vifa1g10608 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 190 IPR036426 -
Vifa1g10608 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 778 - -
Vifa1g10608 815 CDD B_lectin 49 162 IPR001480 -
Vifa1g10608 815 SUPERFAMILY Protein kinase-like (PK-like) 515 796 IPR011009 -
Vifa1g10608 815 Pfam S-locus glycoprotein domain 218 332 IPR000858 GO:0048544
Vifa1g10608 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 159 - -
Vifa1g10608 815 SMART serkin_6 529 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10608 815 Pfam PAN-like domain 357 413 IPR003609 -
Vifa1g10608 815 Gene3D Transferase(Phosphotransferase) domain 1 577 777 - -
Vifa1g10608 815 Gene3D Phosphorylase Kinase; domain 1 491 576 - -
Vifa1g10608 815 SMART blect_4 43 162 IPR001480 -
Vifa1g10608 815 ProSiteProfiles Protein kinase domain profile. 529 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10608 815 Gene3D - 33 159 IPR036426 -
Vifa1g10608 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 761 - -
Vifa1g10608 815 Pfam Protein tyrosine and serine/threonine kinase 566 768 IPR001245 GO:0004672|GO:0006468
Vifa1g10608 815 CDD PAN_AP_plant 354 428 - -
Vifa1g10608 815 ProSiteProfiles Bulb-type lectin domain profile. 35 161 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10608 Vifa-Chr1 1786087175 1786090219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10608 434 783 Receptor kinase-like Gene Family AT4G23230 47.368 8.84e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g10608 PK_Tyr_Ser-Thr 5.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10608 - - gmx:106794169 1124.77