Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10607 ATGATGATCACAACAAACCATTGCCAAACCTTATTTTCGTTTGCCTGTCTGTCGTGTTTCTTTTGTTTCTGCTCAGAATTCTCATGTGCCGCTTCAACTTCCAGAGTCAGTATCAAACATGGTGATTTCATCAGAGACAAAGAAGGCGAAGTTTTAGTCTCCAATGGCTTCAACTTCGTAGTGGGTTTCTTCGGTTTTCAAAACTCTTCTTCTCGTTACGTTGGTATTTGGTACTACAGCATTCCTGGACCTCAAGTTATTTGGGTTGCAAACAGAAACAAACCCATCAACGGTAACGGTGGATCCATCACTATATCTACAAACGGCAATTTAGTCATTCTTGATGAAAACAAAACACAACTCTGGTCTACCAATGTTTCCATCATTGACAGCAACAAAAACAACTCCGAAGCTGTTCTTAAAGATAATGGTAATCTTGTTCTTTCAAATGGGAAAGTGGTGTTATGGGAAAGTTTTGAAAATCCAACTGATACTTATCTACCTGGTATGAAAGTTCCTGTGAATGGGAAGAGCTTTAACTTCACTTCATGGAAATCAAGTACAGATCCTTCATTAGGGAACCATACAATGGGAATTGATCCAGAAGGGTTACCACCACAGATAGTAGTTTGGGAAGGAGAGAAAAGAAAATGGAGAAGTGGTTATTGGGATGGTAGAGTTTTCACTGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTTCTTAATTTGGATAATAATGGAGGAGATAGGTACTTTGTTTATAATAATAAGTTGTTGTTGAATGGTACTAGTTCTGTGAGGTTTCAGATTGGTTGGGATGGTTATGAAAGAGAGTTTATTTGGAATCAAAATGAGAAAAATTGGACTGAGAAACAAAAAGGGCCTCATAATGAGTGGGAGGTTTATAACTTTTGTGGTGGTTTTGCAGCTCGTGATTTGTTGGTTTCGGGTTCGGCTACTTGTAGTTGCTTACAAGGGTTTGAACTAAAGGATAAAGGGAATTTGTCAGGTGGATGTAGGAGGATGACAGCATTGAAGGGCGAACAGAAGAATGGTAGTTTTGGAGAAGATGGTTTCATGGAGCTTAGGTGTATGAAGTTACCCGATTTCGCGAATTTGGTGGTACATACTACGGATTGTGAAGGTGATTGTTTGAAGAATGGTTCTTGCACTGCCTATGCAGAAGTTATGGGAATTGGTTGCATGGCTTGGTATGGAGAGTTGGTAGATCTTCAAACGTTCGAACATGGAGGGAATACATTGCACATTCGTCTTGCTCATTCTGATTTAGTTAATAACAAGAAGATAGTGATTCTGATAATATCAGCTGTTCTAGCAGGGCTAATCTCTCTAGGAATGTTTGTATGGTTGGTACGGATGAACAAGAGAAAACTCAAAGTAGTTTCTACTGCTTCGCCTCGCAAAAATAGTGATATAATACCAATGTTTGATGCAAGAAAGAGCAGACAGATGTCTGCAGAGTTATCAGGATCAATTGAACTTAGTTTGGAAGGCAATCAACTAAGTAAAACTAAGATTCCATTTTACAATTTTATTTGCATGTCAGCAGCAACCAACAATTTTTCTGAAGAAAATAAGCTCGGACAAGGTGGTTTCGGTCCTGTCTACAAGGGAATGCTTCCGACCGGAGAAGAAGTAGCTGTTAAGAGGCTTTCAAGACGATCAGGCCAAGGGGAAGAAAAGTTGCTTGTATATGAATTCATGCCAAACAAAAGCTTGGATTGCTTTTTATTCGATCCTATTAAGCAAACACAATTAAATTGGGCGAGACGTTTTGAAATCATTGAAGGAATTGCAAGAGGACTACTCTATCTGCATCGTGATTCAAGACTTAGAATTATTCATCGTGATCTAAAAGCAAGTAACATTTTGTTAGACGAAAACATGAACCCAAAAATATCAGATTTTGGCTTAGCCCGGATATTCGCTGGAAATCAAAATGAAGCCAATACAACCAGAGTGGTTGGTACATATGGTTATATGTCTCCTGAATACGTTATGGAAGGCCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGTGTATTGCTACTAGAGATTGTGAGTGGCCGCAAAAACACTAGCTTTCGTCATTCAGATGATTCGAGTCTCATAGGTTATGCATGGCATCTTTGGAACGAACATAGAGCAATGGAACTTGTTGATGGTTGCATTCGCGATTCTTGCCCTAAAAACAAAGCATTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCAGGTCATAGACCAAACATGTCGAATGTTGTGTTGATGCTTGAGAGTGAAGCAACCACTCTTCCTTTACCTGTGCAGCCTTTGATTACTTCCATGAGGAGTTATGAAGACAGAGAATTTTACATGGATGGTCTTGATGTTTCAAATGATCTCACGGTCACAATGCTAGTAGGGAGATAG 2451 0.3909 MMITTNHCQTLFSFACLSCFFCFCSEFSCAASTSRVSIKHGDFIRDKEGEVLVSNGFNFVVGFFGFQNSSSRYVGIWYYSIPGPQVIWVANRNKPINGNGGSITISTNGNLVILDENKTQLWSTNVSIIDSNKNNSEAVLKDNGNLVLSNGKVVLWESFENPTDTYLPGMKVPVNGKSFNFTSWKSSTDPSLGNHTMGIDPEGLPPQIVVWEGEKRKWRSGYWDGRVFTGVDMTGSFLHGFVLNLDNNGGDRYFVYNNKLLLNGTSSVRFQIGWDGYEREFIWNQNEKNWTEKQKGPHNEWEVYNFCGGFAARDLLVSGSATCSCLQGFELKDKGNLSGGCRRMTALKGEQKNGSFGEDGFMELRCMKLPDFANLVVHTTDCEGDCLKNGSCTAYAEVMGIGCMAWYGELVDLQTFEHGGNTLHIRLAHSDLVNNKKIVILIISAVLAGLISLGMFVWLVRMNKRKLKVVSTASPRKNSDIIPMFDARKSRQMSAELSGSIELSLEGNQLSKTKIPFYNFICMSAATNNFSEENKLGQGGFGPVYKGMLPTGEEVAVKRLSRRSGQGEEKLLVYEFMPNKSLDCFLFDPIKQTQLNWARRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFAGNQNEANTTRVVGTYGYMSPEYVMEGLFSVKSDVYSFGVLLLEIVSGRKNTSFRHSDDSSLIGYAWHLWNEHRAMELVDGCIRDSCPKNKALRCIHIGMLCVQDSAGHRPNMSNVVLMLESEATTLPLPVQPLITSMRSYEDREFYMDGLDVSNDLTVTMLVGR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10607 816 Gene3D Phosphorylase Kinase; domain 1 492 577 - -
Vifa1g10607 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 190 IPR036426 -
Vifa1g10607 816 CDD B_lectin 49 162 IPR001480 -
Vifa1g10607 816 SUPERFAMILY Protein kinase-like (PK-like) 516 797 IPR011009 -
Vifa1g10607 816 Pfam S-locus glycoprotein domain 218 332 IPR000858 GO:0048544
Vifa1g10607 816 PIRSF SRK 6 570 IPR024171 GO:0004674
Vifa1g10607 816 PIRSF SRK 566 816 IPR024171 GO:0004674
Vifa1g10607 816 Pfam Protein tyrosine and serine/threonine kinase 567 769 IPR001245 GO:0004672|GO:0006468
Vifa1g10607 816 Pfam D-mannose binding lectin 86 185 IPR001480 -
Vifa1g10607 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vifa1g10607 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 159 - -
Vifa1g10607 816 ProSiteProfiles Protein kinase domain profile. 530 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10607 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 779 - -
Vifa1g10607 816 Pfam PAN-like domain 357 413 IPR003609 -
Vifa1g10607 816 SMART blect_4 43 162 IPR001480 -
Vifa1g10607 816 Gene3D - 33 159 IPR036426 -
Vifa1g10607 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 762 - -
Vifa1g10607 816 SMART serkin_6 530 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10607 816 Gene3D Transferase(Phosphotransferase) domain 1 578 778 - -
Vifa1g10607 816 CDD PAN_AP_plant 354 428 - -
Vifa1g10607 816 ProSiteProfiles Bulb-type lectin domain profile. 35 161 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10607 Vifa-Chr1 1786087175 1786090219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10607 434 784 Receptor kinase-like Gene Family AT4G23230 47.244 1.23e-111 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g10607 PK_Tyr_Ser-Thr 5.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10607 - - gmx:106794169 1126.69