Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10601 ATGACGCTGACTCGGGATCTGCAGGAGGGTCCAAAAAGAATGCAGGAAAGATTTCTGATAGTGAATACTAATCAGAGAGGTAATTCTAATAAAGGTCAGAAAACACTGTTATCTGAGGTGAAGTTTTCGAATAGCAGAGAATATTCCGATGATAGGAACATCGATGAACTTGAATTGCCACTGTTTGAGTTTCATGTTATATCAGATGCGACAGACTGTTTCTCTTTAGCAAATAAACTTGGAGAAGGAGGCTTTGGAACTGTTTACAGGGGTAGGCTAGTTGATGGCCAGGAAATTGCGGTGAAGAGCCTAGACTCTATTTTATTTGACCAAACAAAGAATTCCAAGCTAGATTGGCCAATGAGATTCAATATCATATGTGGAATAGCCAAAGGGTTACTTTATCTTCACCATGACTCAAGATTTAGAATCATCCATAGAGATCTCAAGGCAAGCAATGTTCTACTTGATAGAGAAATGAATCCAAAGATATCAGATTTCGGGATGGTTAGAATTTTCGACAATGATCAGACACACTCTAATACAAAGAGAGTTGTTGGAACATATGGCTATATGTCACCTGAATATGCAATGGGTGGATATTTTTCGGTGAAATCAGATGTTTTTAGTTTTGGAGTTCTCGTGTTGGAGGTCTTAAGCGGCATGAAGAATAGAGGTTTTCATTTCTCAGATGATCTAAATCTCCTCGGACACGCATGGAGGCTGTGGAACGAAGGGAAAGTATTGGAACTTATCGATTCATCATATGCAGTGGTGATGATGTTGAATAGCGAAACAACAACGCTACCGCAACCGAAGCATCCTGGATTCGTTCTTGGAAGAAATCCAGGTGAATCCGATTCATCTTCGGCTAGACAAGAAGAATCACACTCAATAAACCAAGTCACTGTTACAATAGTAACTGGCAGATAG 933 0.3976 MTLTRDLQEGPKRMQERFLIVNTNQRGNSNKGQKTLLSEVKFSNSREYSDDRNIDELELPLFEFHVISDATDCFSLANKLGEGGFGTVYRGRLVDGQEIAVKSLDSILFDQTKNSKLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNVLLDREMNPKISDFGMVRIFDNDQTHSNTKRVVGTYGYMSPEYAMGGYFSVKSDVFSFGVLVLEVLSGMKNRGFHFSDDLNLLGHAWRLWNEGKVLELIDSSYAVVMMLNSETTTLPQPKHPGFVLGRNPGESDSSSARQEESHSINQVTVTIVTGR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10601 310 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 99 269 - -
Vifa1g10601 310 Gene3D Transferase(Phosphotransferase) domain 1 104 274 - -
Vifa1g10601 310 Pfam Domain of unknown function (DUF3403) 264 310 IPR021820 GO:0004674
Vifa1g10601 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vifa1g10601 310 MobiDBLite consensus disorder prediction 272 298 - -
Vifa1g10601 310 ProSiteProfiles Protein kinase domain profile. 1 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10601 310 MobiDBLite consensus disorder prediction 283 298 - -
Vifa1g10601 310 Pfam Protein tyrosine and serine/threonine kinase 112 221 IPR001245 GO:0004672|GO:0006468
Vifa1g10601 310 Gene3D Transferase(Phosphotransferase) domain 1 62 103 - -
Vifa1g10601 310 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 104 - -
Vifa1g10601 310 SMART serkin_6 74 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10601 310 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
Vifa1g10601 310 SUPERFAMILY Protein kinase-like (PK-like) 57 255 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10601 Vifa-Chr1 1785292073 1785294018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10601 62 299 Receptor kinase-like Gene Family AT4G11530 45.342 4.59e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g10601 PK_Tyr_Ser-Thr 4.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10601 - - qsu:112010837 369.007