Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10600 ATGACGCTGACTCGGGATCTGCAGGAGGGTCCAAAAAGAATGCAGGAAAGATTTCTGATAGTGAATACTAATCAGAGAGGTAATTCTAATAAAGGTCAGAAAACACTGTTATCTGAGGTGAAGTTTTCGAATAGCAGAGAATATTCCGATGATAGGAACATCGATGAACTTGAATTGCCACTGTTTGAGTTTCATGTTATATCAGATGCGACAGACTGTTTCTCTTTAGCAAATAAACTTGGAGAAGGAGGCTTTGGAACTGTTTACAGGATTAGTGCTATCAAGCAGTGTCAGACACCGGACACGCCTTCAATGAGAAGTGTTGAACTATATAAGCACCCTTTGTTTACAATGAAATCGATACAAGTGAATGTGGGAAATACAGGCCTAGACTCTATTTTATTTGACCAAACAAAGAATTCCAAGCTAGATTGGCCAATGAGATTCAATATCATATGTGGAATAGCCAAAGGGTTACTTTATCTTCACCATGACTCAAGATTTAGAATCATCCATAGAGATCTCAAGGCAAGCAATGTTCTACTTGATAGAGAAATGAATCCAAAGATATCAGATTTCGGGATGGTTAGAATTTTCGACAATGATCAGACACACTCTAATACAAAGAGAGTTGTTGGAACATATGGCTATATGTCACCTGAATATGCAATGGGTGGATATTTTTCGGTGAAATCAGATGTTTTTAGTTTTGGAGTTCTCGTGTTGGAGGTCTTAAGCGGCATGAAGAATAGAGGTTTTCATTTCTCAGATGATCTAAATCTCCTCGGACACGCATGGAGGCTGTGGAACGAAGGGAAAGTATTGGAACTTATCGATTCATCATATGCAGTGGTGATGATGTTGAATAGCGAAACAACAACGCTACCGCAACCGAAGCATCCTGGATTCGTTCTTGGAAGAAATCCAGGTGAATCCGATTCATCTTCGGCTAGACAAGAAGAATCACACTCAATAAACCAAGTCACTGTTACAATAGTAACTGGCAGATAG 1011 0.3937 MTLTRDLQEGPKRMQERFLIVNTNQRGNSNKGQKTLLSEVKFSNSREYSDDRNIDELELPLFEFHVISDATDCFSLANKLGEGGFGTVYRISAIKQCQTPDTPSMRSVELYKHPLFTMKSIQVNVGNTGLDSILFDQTKNSKLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNVLLDREMNPKISDFGMVRIFDNDQTHSNTKRVVGTYGYMSPEYAMGGYFSVKSDVFSFGVLVLEVLSGMKNRGFHFSDDLNLLGHAWRLWNEGKVLELIDSSYAVVMMLNSETTTLPQPKHPGFVLGRNPGESDSSSARQEESHSINQVTVTIVTGR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10600 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vifa1g10600 336 ProSiteProfiles Protein kinase domain profile. 74 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10600 336 Pfam Protein tyrosine and serine/threonine kinase 130 247 IPR001245 GO:0004672|GO:0006468
Vifa1g10600 336 Pfam Domain of unknown function (DUF3403) 290 336 IPR021820 GO:0004674
Vifa1g10600 336 Gene3D Transferase(Phosphotransferase) domain 1 126 300 - -
Vifa1g10600 336 MobiDBLite consensus disorder prediction 309 324 - -
Vifa1g10600 336 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 96 - -
Vifa1g10600 336 MobiDBLite consensus disorder prediction 298 324 - -
Vifa1g10600 336 SUPERFAMILY Protein kinase-like (PK-like) 57 281 IPR011009 -
Vifa1g10600 336 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 125 295 - -
Vifa1g10600 336 Gene3D Phosphorylase Kinase; domain 1 24 106 - -
Vifa1g10600 336 SMART serkin_6 74 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10600 Vifa-Chr1 1785292073 1785294018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10600 62 325 Receptor kinase-like Gene Family AT4G11530 44.923 6.70e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g10600 PK_Tyr_Ser-Thr 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10600 - - qsu:112010837 362.073