Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10599 ATGCGAGGATGTTTCTTCTTCGTCCTCTTCTTCTTGTTCATCACAATCTCAACCTCAACAGTCACAGACACGTTAACCTCAACACAAATTCTCAGAACTAATCAGACCCTTGAATCTCTTCAAGAATCATTCGTTCTTGGTTTCATCCAAGGAACATACCCCAACATTTATTTAGCCATATGGTACAAAAACATCCCAGACACAGTTGTTTGGGTCGCAAACAGAGACAACCCTCTTCAAAATTCAACAAACACCTTTCTCAAAATCACTCACGATGGAAACATAGTACTTCTCAATTCATCATCAGATTCAAACAACCTCGTCTGGTCTTCGAATCAAACAAATGCTAAAAACCAAGTTCTTGTTCTTCAGCTTTTAGATACTGGAAATTTAGTACTCAGAGAAACAAACGTGAATGATCCAACAAAATACCTATGGCAAAGCTTCGATCACCCGACAGATACTTTGTTACCAACCATGAATATGGGTTGGAACTTGGACAAAAAAACTGAAAAGCACTTAACATCATGGAAGATCACAGGTGAAGATCCTTCATCAGGAGATTATTCATTCAAAATTGATTATCATGGTTTACCAGAAGTTTTCCTGCGGAATGATGATACTATAATCTACCGAAGTGGACCTTGGAATGGTGAAAGATTCAGCGGTGTACCAGAGATGCAACCTGGCACAGATTCAATAGTTTTCAGTTTCTCATCAAACGAACACGGTGTTAACTACTCGTTTTCGATTGGGAATAAGTCCATTTTTTCGAGACTTACAGTGAATTCTAATGGTCAACTTCAACGTCTAACTTGGGTTCAAAGTAGCAAAACATGGACAACGTTTTGGTATGCGCCGAAAGATCAATGTGATGGTTACAAAGAATGTGGTCCTTATGGTGTATGTGATTCCAAGGCTTCGCCGGTTTGTGAATGTGTGAAAGGGTTTAGTCCTAAGAATGAACAAGCTTGGAAATTGAGAGATGGATCTGATGGGTGTGTGAGGAATAAGGATTTGGATTGTAAGAGTGATAAGTTTTATCTTATGGAGAATGTGAAGTTGCCTGATACAACCTCAGTGTTTGTGAATAGAACAATGGAGATTGATGAATGTGGTGAATTGTGTCATGGGAATTGTTCATGTACTGGTTATGCAAATGTTTATATAAGTAATGGAGGAAGTGGTTGTGTTATGTGGCTTGATGAACTTAATGATATAAGAAGTTATCCTGATGGTGGACAAGATCTCTTTGTTAGATTGGCAGCTTCTGAACTAGATAACACAGGATCTACTAGTGGCTCTAAAAAGAAAAGTCATCAAACTGAGATTATAGGAATCACAATTTCTGCGGCTGTTATAGTTTTGGGATTGTGTATCCTTTTATGTAAGAAGAGGAAATTGCTAAGTCATGGAAAGACAGACAACAGAGGTTCTATCCAAAGAAGCAGAGATTTGTTGATGAATGAGGTTGTTTTTTCAAGTAATAGAGAAACCTCGGGAGATAGGAACATGGATGAACTAGATTTGCCAATGTTTGAGTTTAATACCATAATAATAGCTACAAACAACTTCTTGGAAGAAAATAAACTTGGAGAAGGAGGCTTTGGTAGTGTTTATAGGGGAAGGTTGATTGAAGGGCAAGAAATTGCTGTCAAGAGGTTATCAAAAACTTCAGGGCAAGGAAATGAAGAATTTAAGAATGAAGTCAAGTTAATTGCCAAGCTTCAACATCGAAACCTTGTTCGGCTTTTAGGTTATTGCATCGAAAATGATGAGAAGCTTCTTGTGTATGAGTATATGGAAAATAGAAGCCTTGATTCCATTTTGTTTGACAAAGCTAGAAAGCCCTTATTGGACTGGAAAAAGCGATTCAACGTTATATGCGGAATCGCTAGAGGGCTTCTTTATCTGCATCATGATTCAAGGCTGAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACGGAGAAATGAATCCAAAAATATCAGATTTTGGGATGGCTAGAATATTTCGCCATGATCAAACAGAAGCAAATACATTGCGAGTTGTCGGAACATATGGCTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCGGTGAAATCAGATGTTTTTAGCTTTGGAGTTCTTGTGCTAGAGATCCTAAGTGGAAGGAAAAATAGAGGATTCTACTACGCAAACGATGATATGAATCTTCTACAGAATGCATGGGGACAGTGGAGGGAAGGAAAAGCATTGGAACTCATTGATTCGTCAATTGGCGATTCATATACAGAATCTGAAGTTCTTAGATGCATACACGTTGGACTATTGTGCGTCCAAGAACGCGCCGAAGATAGGCCAACAATGCCTTCAGTGCTCTTGATGCTTGGAAGTGAAACTGCACTAATGCCAGAACCTAGAAGTCCAGGGTTTTCCCTTGGAAGATCAAAGAATCCTCCGGAGACCGATTCGTCTTCAAGTAAGCAAGACGAAACATGGAGTGTGAACCAAGTCACAGTCACATTGCTTGATGCTAGGTAG 2541 0.3908 MRGCFFFVLFFLFITISTSTVTDTLTSTQILRTNQTLESLQESFVLGFIQGTYPNIYLAIWYKNIPDTVVWVANRDNPLQNSTNTFLKITHDGNIVLLNSSSDSNNLVWSSNQTNAKNQVLVLQLLDTGNLVLRETNVNDPTKYLWQSFDHPTDTLLPTMNMGWNLDKKTEKHLTSWKITGEDPSSGDYSFKIDYHGLPEVFLRNDDTIIYRSGPWNGERFSGVPEMQPGTDSIVFSFSSNEHGVNYSFSIGNKSIFSRLTVNSNGQLQRLTWVQSSKTWTTFWYAPKDQCDGYKECGPYGVCDSKASPVCECVKGFSPKNEQAWKLRDGSDGCVRNKDLDCKSDKFYLMENVKLPDTTSVFVNRTMEIDECGELCHGNCSCTGYANVYISNGGSGCVMWLDELNDIRSYPDGGQDLFVRLAASELDNTGSTSGSKKKSHQTEIIGITISAAVIVLGLCILLCKKRKLLSHGKTDNRGSIQRSRDLLMNEVVFSSNRETSGDRNMDELDLPMFEFNTIIIATNNFLEENKLGEGGFGSVYRGRLIEGQEIAVKRLSKTSGQGNEEFKNEVKLIAKLQHRNLVRLLGYCIENDEKLLVYEYMENRSLDSILFDKARKPLLDWKKRFNVICGIARGLLYLHHDSRLRIIHRDLKASNILLDGEMNPKISDFGMARIFRHDQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEILSGRKNRGFYYANDDMNLLQNAWGQWREGKALELIDSSIGDSYTESEVLRCIHVGLLCVQERAEDRPTMPSVLLMLGSETALMPEPRSPGFSLGRSKNPPETDSSSSKQDETWSVNQVTVTLLDAR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10599 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 218 IPR036426 -
Vifa1g10599 846 CDD STKc_IRAK 531 796 - -
Vifa1g10599 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Vifa1g10599 846 Pfam D-mannose binding lectin 68 178 IPR001480 -
Vifa1g10599 846 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Vifa1g10599 846 MobiDBLite consensus disorder prediction 815 835 - -
Vifa1g10599 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 489 600 - -
Vifa1g10599 846 PIRSF SRK 1 846 IPR024171 GO:0004674
Vifa1g10599 846 SUPERFAMILY Protein kinase-like (PK-like) 506 796 IPR011009 -
Vifa1g10599 846 ProSiteProfiles Protein kinase domain profile. 525 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10599 846 SMART blect_4 28 152 IPR001480 -
Vifa1g10599 846 Gene3D - 17 150 IPR036426 -
Vifa1g10599 846 SMART serkin_6 525 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10599 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Vifa1g10599 846 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Vifa1g10599 846 Pfam PAN-like domain 342 407 IPR003609 -
Vifa1g10599 846 SMART ntp_6 342 421 IPR003609 -
Vifa1g10599 846 Pfam Protein tyrosine and serine/threonine kinase 528 792 IPR001245 GO:0004672|GO:0006468
Vifa1g10599 846 Gene3D Transferase(Phosphotransferase) domain 1 601 803 - -
Vifa1g10599 846 MobiDBLite consensus disorder prediction 803 835 - -
Vifa1g10599 846 ProSiteProfiles Bulb-type lectin domain profile. 22 146 IPR001480 -
Vifa1g10599 846 CDD B_lectin 28 152 IPR001480 -
Vifa1g10599 846 Pfam Receptor serine/threonine kinase 481 515 IPR022126 GO:0004674
Vifa1g10599 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 787 - -
Vifa1g10599 846 Pfam Domain of unknown function (DUF3403) 798 846 IPR021820 GO:0004674
Vifa1g10599 846 CDD PAN_AP_plant 339 422 - -
Vifa1g10599 846 Gene3D Phosphorylase Kinase; domain 1 488 600 - -
Vifa1g10599 846 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10599 Vifa-Chr1 1785287967 1785291807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10599 513 813 Receptor kinase-like Gene Family AT4G11530 63.907 1.18e-135 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g10599 PK_Tyr_Ser-Thr 8.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10599 - - gmx:100797331 1218.76