Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10590 ATGGAGAACACGACAATGATAGCACCGTCAAATGTTTCAGATAGTAAAATGATTTGTTATACTCCATTCATGACAACAACAAATGGTGTATGGCAAGGAGATAACCCTTTAGATTTTTCTATCCCTGTCTTCATTTTGCAAATAACCTTAATTGTTCTTGCCACACGTTTATTTGTTTGCATCCTCAGACCCTTTCATCAACCTCGTGTCATTGCTGAAATATTGGGTGGATTGTTTTTGGGGCCATCAGTTCTTGGAAAACATGAAACTTTTGCGAATATTGTATTTCCTCTAAAAAGTGCACTGGTGTTAGAAACAATGGCAAATATAGGGTTGATATACTTTTTGTTCTTGATTGGATTAGAAATGGACATGTCTATTGTGAAACGCACGGGGAGAAAGGCGATGTGCATTGCGGTTGCTGGTATGATATTGCCGTTTATTGTTGGTATTGGAGTATCCGTTGCTTTGAATGATAGAGACGCAAGTGTTAACGAAGTTAGCTATGTTCTCTATCTCGGTATTGTTCTATCTGTTACTTCGTTTCCTGTTCTCGCTCGAATGCTTGCCGAGCTCAAACTCATCAACACCGAGTTAGGAAAGCTTGCCCTTTCAACTTCCCTCATCAATGATATGTGTGCATGGGTTTTACTAGCTCTAGCTATTGCTTTATCAGAACAGAATTCAACAACTTTGGCTTCGGTTTGGGTTGTATTGTCCAATGTTTTCTTTGTTGGTTTTTGTTTTCTTGTTGTTAGGCCATCAGTGATTTGGCTGATCAAGAAAACCCCCGAAGGTAAACCGTTTAGCGACTTCCAAATATGCATTGTACTCGTTGGTGTTATGGTCTCGGCTTTCATTACAGATGTTATTGGAATGCATTCGATTTTCGGAGCTTTTGTTTATGGATTAGTGATTCCAAATGGTCCACTTGGAGCTGCTATAATAGAAAAGCTTGAAGACTTTGTTTCCGGGCTTTTAATACCGCTTTTTTATGCTATTAGTGGACTTAAGACTAACATTACCTTAACACATGGAGGTCTTTCATGGGCGTTTATATTCACAGTCGTTCCTCTCGCTTGTTTCGGAAAGATCATCGGGACTCTTATTATTTCAATCCTTTTCGACATACCAACTCGTGATGGCGTTGTTCTTGGTTTACTTATGAACACCAAAGGTCTTATTGAAATGATTGTGCTAAATATTGGAAGGGAACAAAAGGTCTTGGGTGATGAAATATTTTCAGTTATGATTATTGTGACAATTATAATGACAGCAATAATTTCACCTGTTGTGACACTAATTTATAAGCCAAGGAAAAGGTTCATACCTTATAGAAAGAGAACAGTGCAAAGTTCAAGAGTTGATGCAGAGTTAAGGGTGTTGGTGTGCGTTCATGCTCCTAGAAATGTTCCAACAATAATCAATCTTCTAGAAGCAACATACCCAAACAAAAGGTCTCCAATATGGGCTTATGTGCTCCACTTAGTAGAACTCACCCGTCGAGCATCGGCGATGCTTGCTGTCCACGCCACTAGACAATCAGGAGGTCCGGCACTCAACAAAACGCAAGCGCAAACGGAACACATTGTCAGCGCATTTAGAAACTTTGAGGAACATGTTGGTTATGTCTCGGTCCAGCCTATGACGGCGGTTTCTCCTTACCCTACCATGCATGAAGACATATGCAATGCCGCGGAGGAAAAAAGGGTAGCCACCATTATCATTCCTTTCCATAAACAACAAACGGTTGATGGAGACATGTTAGAAACAAATCCAGCATTGAGAATGGTGAACCATAACTTACTACAAACCGCTCCTTGTTCGGTCGGGTTACTTGTCGATAGAGGCATTAACGGATCCAATCGATTAACTTCAAATCAAGCATCTCATCAGGTAGCTGTGTTATTCTTCGGTGGATCGGATGATAGGGAAGCGTTATCCTATGGATGGAGAATGTCAAGGCATCCAAGAGTTAATCTCACTGTAATGCATTTCATTCCAAAAAAAGACGAAACTCAAACTTTAAAGGCAGACGACGATCAACTAGACGATCCAAGGAGTTTAATTTCAAACAAACTAGACGAAGAATGCATAAACGAGATGAAAATGATTGTTGCGAGCAACGATTCAATGAGTTACATAGAAAAAGTTGTTAGCAACGGGGAGGAAACAGTTGCGGCGATAAGAGGAATGAACAATGTCAATGATCTCTTCATAGTAGGCCAAGGTCAGGGAAACTCATCATCAGCATTAATGGAAGGGTTGACGGATTGGAGTGAGTGTCCCGAGTTAGGAGCCATCGGAGATTTGTTAGCTTCTTCCGACTTCGAAACATCAGCGTCCGTTCTTGTTATGCATCAATATGTTGGACAAGGACCAGATGGAGAGGACATTTTTGTAGGTGAAAGACCATGGCAATCAAGTGATGAGTTTAATAACTTGAGACAACAACATAGGGGAAGATATACAACAGTGTCAACAGGGACAAATACTCTAGCACCCCAATTTTTATAA 2517 0.4041 MENTTMIAPSNVSDSKMICYTPFMTTTNGVWQGDNPLDFSIPVFILQITLIVLATRLFVCILRPFHQPRVIAEILGGLFLGPSVLGKHETFANIVFPLKSALVLETMANIGLIYFLFLIGLEMDMSIVKRTGRKAMCIAVAGMILPFIVGIGVSVALNDRDASVNEVSYVLYLGIVLSVTSFPVLARMLAELKLINTELGKLALSTSLINDMCAWVLLALAIALSEQNSTTLASVWVVLSNVFFVGFCFLVVRPSVIWLIKKTPEGKPFSDFQICIVLVGVMVSAFITDVIGMHSIFGAFVYGLVIPNGPLGAAIIEKLEDFVSGLLIPLFYAISGLKTNITLTHGGLSWAFIFTVVPLACFGKIIGTLIISILFDIPTRDGVVLGLLMNTKGLIEMIVLNIGREQKVLGDEIFSVMIIVTIIMTAIISPVVTLIYKPRKRFIPYRKRTVQSSRVDAELRVLVCVHAPRNVPTIINLLEATYPNKRSPIWAYVLHLVELTRRASAMLAVHATRQSGGPALNKTQAQTEHIVSAFRNFEEHVGYVSVQPMTAVSPYPTMHEDICNAAEEKRVATIIIPFHKQQTVDGDMLETNPALRMVNHNLLQTAPCSVGLLVDRGINGSNRLTSNQASHQVAVLFFGGSDDREALSYGWRMSRHPRVNLTVMHFIPKKDETQTLKADDDQLDDPRSLISNKLDEECINEMKMIVASNDSMSYIEKVVSNGEETVAAIRGMNNVNDLFIVGQGQGNSSSALMEGLTDWSECPELGAIGDLLASSDFETSASVLVMHQYVGQGPDGEDIFVGERPWQSSDEFNNLRQQHRGRYTTVSTGTNTLAPQFL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10590 838 Gene3D - 43 442 IPR038770 -
Vifa1g10590 838 FunFam Cation/H(+) antiporter 15 43 443 - -
Vifa1g10590 838 PANTHER CATION/H + ANTIPORTER 18 790 - -
Vifa1g10590 838 Pfam Sodium/hydrogen exchanger family 50 432 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10590 Vifa-Chr1 1782956463 1782959205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10590 13 810 Antiporter Super Family AT2G13620 60.648 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10590 K26731 - gmx:100800514 1221.84