Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10584 ATGAAAAAAATTAAAGAAGAGGGTAAAAAGCATTTGCACGGGATTGCATTGTCCCTGCAGATCTTTGTATTCCTACATCTGACAAAGATCAAGGACTTACTCATGTTATCGAGTTTGGATTTCGTAAATGAACAACTTCCCACAACGACTGCTAAAGAGGTTAACTACAATCCATATGATAATATTCAATTCCCCGACCTGAAAGAATATTCAACTTTCGAGTTGGAAAGAAGGCATTGGAGCATAAGTTGTTTTAGTAAAAGACCACAACCTGAGGAACAACAACCCGAAAGAGTACAAGATGTTCGAACAGAAGAGCCAATTGAGGTGGAACACCATAATTTGGATGATGTCGTGGACAATCAAGAAAAGCATTGTGGAAGGAAAAGAAAAAGCATATGGAGTTCAAAAGAAAATGAAGTTGCTCATGAGGAGGATGCAGGAGATAACAATGAAGATGGGGAAGAAACAAAGACCAAGGAGACACTAGGCAAGTGGAAGCAACATTTGAGTCACGAAGAAATGATTGAGAAAGAGATAGAGGCTAGCAGACAAAGGCTCTTAGTCTCACAGCTATGTATAGCAGAGCTAGATGACTCGGGCGGAGACCGGGTGTTCTGTGACAAATGCAAGACCATGAGCCGTGCAATCTGTCAGAAGCACAAGACTGTGAAGGCCATTGATTGCTCAAGTTTGCAGCAGAAAGTTGTTAACACCAAGAGGTTCTTTACTAGTTACACTAAAGGTTGGAAGTGTTCAGAGAAGCGGCCTTGTTGTATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAGGAATGTTTACCTGATCATTTTGAGGAGTTCGTATCTTTCTTGCCGTATAAAGAATACACTCATCCTATAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCATTTGGATTTGCTAAGGAGCTTGGGTGTGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTGAAGGGAAATTGGGTTCTGAGGATGTTACTGCCATTGAGAAATTGATGCCAAAGAACCTTGAGCAAGACAAGAGGGAACTACATGATATTCATCAGGATGGGGAGGCTAATGACATTATTTCTTCAGACACCGGCGCTAATGATGATGGCGCGTCTTCTGGGTCAAAGCTCAAAGAAGTTGAAAAAGGTACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGATTCTTTGGATGGGGCTCTCTGGGATATTTTTCGAAGAAAGGATATACCTAAATTGGAGAGATATTTAAATAAGCATTTCGGAGAGTTCAGTCATTTTGGCGGTCTTCCTTTAAAGGAGGTTACTCACCCCATCCATGATCAGACCTTTTATCTGACTGTGGAGCATAAGAAGAAGCTTAAGGAGGAGTGTGGAATTGAGCCCTGGACCTTCACACAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGATGTCCTCATCAAGTCAGAAATCTGAAATCATGCACCAAGGTTGCACTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAAGAATTCCGCGAACTTCCGGAAAATCATGGGTCCAAAGAGGACAAATTGCAGGTGAAGAAAATGGTTATACATGCTGTGGATGATGCGGTCAAAAGGTTGAAAAACTCTATCTTCGGTTAA 1752 0.4201 MKKIKEEGKKHLHGIALSLQIFVFLHLTKIKDLLMLSSLDFVNEQLPTTTAKEVNYNPYDNIQFPDLKEYSTFELERRHWSISCFSKRPQPEEQQPERVQDVRTEEPIEVEHHNLDDVVDNQEKHCGRKRKSIWSSKENEVAHEEDAGDNNEDGEETKTKETLGKWKQHLSHEEMIEKEIEASRQRLLVSQLCIAELDDSGGDRVFCDKCKTMSRAICQKHKTVKAIDCSSLQQKVVNTKRFFTSYTKGWKCSEKRPCCMLKLKDWPPSESFKECLPDHFEEFVSFLPYKEYTHPISGSLNLAVKLPDGCLKPDMGPKAYIAFGFAKELGCGDSVTKLHCDMSDAVNVLTHVAEGKLGSEDVTAIEKLMPKNLEQDKRELHDIHQDGEANDIISSDTGANDDGASSGSKLKEVEKGTVEQGDSLLDAVDSLDGALWDIFRRKDIPKLERYLNKHFGEFSHFGGLPLKEVTHPIHDQTFYLTVEHKKKLKEECGIEPWTFTQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRELPENHGSKEDKLQVKKMVIHAVDDAVKRLKNSIFG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10584 583 SUPERFAMILY Clavaminate synthase-like 222 576 - -
Vifa1g10584 583 MobiDBLite consensus disorder prediction 130 144 - -
Vifa1g10584 583 ProSiteProfiles JmjC domain profile. 295 547 IPR003347 -
Vifa1g10584 583 MobiDBLite consensus disorder prediction 388 415 - -
Vifa1g10584 583 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 213 579 IPR045109 GO:0032454|GO:0033169
Vifa1g10584 583 Pfam JmjC domain, hydroxylase 435 530 IPR003347 -
Vifa1g10584 583 SMART cupin_9 276 547 IPR003347 -
Vifa1g10584 583 Gene3D Cupin 188 556 - -
Vifa1g10584 583 MobiDBLite consensus disorder prediction 390 404 - -
Vifa1g10584 583 MobiDBLite consensus disorder prediction 130 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10584 Vifa-Chr1 1782530962 1782537176 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g10584 JmjC 4.3e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10584 K15601 - vvi:100261347 417.542