Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10582 ATGGCGAAAAAATCAACGACGGAGGAGGTTCCGCCGGACGATCTCCGGTGCAGCCGCACCGACGGACGGCAATGGCGGTGCAAACGGAAAGCGATGGAAAACGTGAAGCTATGCGAGGTTCACTATCTGCAAGGTCGGCATCGTCAGAACAAAGAGAGGGTTCCAGAGTCACTGAAACTTTCGAGGGACATGAAGGTGAAGAAGAAGAAGAAGAAAAACGACGTCGTTGAAATTAGGTCAAAGAAGAACAAGAAGAAGAAGAAGCATGTTGATGTGCAATTGGAGTTGATAAGGATGGTGTTGGAGAGAGAGGTTGATAAGAAGAAGAAGAATGTGAAGAGGAACAACAATGAGGAAATTGAATTGCATTACAGTGAAGGTGAATTGAGGAAAGAATTGCCTAATGGGGTTATGGAAATTGCTCCTGTTTCAACACCTTGTGATGTGGAGTTTCAGAGTAACGGCAAAACGTTTATCGCGCCGCGTTACTTCAGGTCCAAGAATGTTGATAGGAGAGTCCCTTTTGATAATTTGCAGGTTTTGAAGAAGTGTGGGAGGAAGAAGTGTCATTGTTGCCAGAGTAGTGATTCAGGGAATCTTATAAAGTGTTCCAACTGCCAGAAGGAGCTTTTCTGCCTGGATTGTATTAAACGAAGATATTCCGAGACTCCAAATGAGGTTAAGATGGCGTGTCCAGTTTGTCGAGGAACTTGTACATGTAAATATTGTCGGGCAGGTCTTTGTAAAGACAATGAAAGTAAGGACCATTTGGCTGGCAGAAATAGTGTTCATAGGATATTGCATTTTCATTATTTGATCTGTATGATCCTTCCTGTACTAAAACAAATAAGTGAGGAGCAGCGTACAGAGCTAGAAACAGAAGCGAAAAATAAAGGGAAAAATATTTCTGATATTCTCATCAAGCAAGTCGAATTTGGCCGCAAAGAGAAAAATAACTGTAATTACTGCAACTCGTCGATTCTGAATCTTCACAGAAGCTGTCTGAGCTGTTCCTACAGCCTTTGTTTAAGATGTTGCCAGGCATTAAGTCAGGGGAGCCCTTTTGAGCATATAAATTCTTTGGTGACCGAGATACCTGACAAAATGGACGTTTGCATTGATAATGAAAGTTACCTTTCGGATGATAATACTATTTCTAGCGACGATGTAACTGATACTTCACTGTTATCCGATTGGACTGGTTGTAATGGTACTACCGACAGTGTATCATGTCCTCCGACAGAGCTAGGTGGTTGTGGTAATACCCACCTTGACTTGAGATGTGTATTTCCTTTAAGTTGGATCGAAGAAATGGAAACAAAGGCAGAAGAAGTAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAATTCAAGTTGTTCACTTTGTAGTGACAAAGATCATAAAACCAACAGGCATAAGCAATCACAAGAAGCGGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCTACAGCTTTCGCCATCAGTTCAGATCATTGCGAACACTTCCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTCCGAAATGTGCTCCGAAGTACAAAAAACCTCAGTTGGGATCCTTTGGTCATGTTCTGTAATTATCTTGAGAAGAGCATTTCAAGATACGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGACAGCATTTTACTGGATCTCTTAGATGTCGACCTCAGAAAAATGATTGTGATGAGATGCTGAAATTAAATGGATGGTTATCTTCCCAACTATTCAAAAAACAGTTTCCAGATCATTTTGCTCAAGTAATTGATGCTCTTCCACTTCAAGAATACATGAATCCCATGTCCGGTCTTCTGAATTTAGCGGCATATATGCCAGATGAGAGTGCGAAACATGACAAAGGCCCGTATGTCCATATTTCTTATGGCTGTGCTGACAAGGAAGCTTGTTCCGTGCTAAATCTCTCTTATGAACCATATGATGTGGTTGATATTATGGCATACACCACAGATGCTCCTCTCTCTCCAGACCATCTTACTAATGTAACTAAGTTATTGAAAAGGCATCAAACTCTGTGTCAAAGGGGGTCGCCAATGAATACTACCGAACAAGTAGAAGACAAGGAACAAAAGGAAACAGAGAGTATTGCTATGGAAGGAACCGACTTTTACAGGAGAGTCAATAGAACGTCTTGGATTAATGAAGTCAAAACAATACCTAGTCAGAGATTAGAGGATAATACTTCCAACAATGAAGAATGTGTTTCTGGTTCAGATTCAGATTCTGAGAAAACACAAAGCTCTTTACCTCTCCAAAAGACAGTTCAAAGCACTGAAATGTATTCTCTTGCTCAGTGGGATGTCTTCCGAAGACAAGATGAACCGAAGCTTCTAGAATATCTCAAAAGACATGCTGATGAATTTTCTTGTGCCAGTGAACATCACGGCAAGAAGATGGTTCAGCCAATTCTTGATCAGAGCATCTTTCTGGACACTACTCACAAAATGAGACTGAAGGAGGAATTCAATATCGAACCGTGGACCTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCCGCCGGATGTCCATACCAGATTAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGGAATTTATGTCTCCTGAGAATGTTGCGGAGTGTATCCAATTGACAGATGAGATCCATTTGCTTCCTGAAGACCATATAGCAAAAGTAGAGATGCTGGAGGTTAGGAAAATGGCTCTTAATAGTGTGGAGACAGCGATAAAAGAAATACATGAGCTCACTTCCAATCCCAAAGCATGA 2838 0.4091 MAKKSTTEEVPPDDLRCSRTDGRQWRCKRKAMENVKLCEVHYLQGRHRQNKERVPESLKLSRDMKVKKKKKKNDVVEIRSKKNKKKKKHVDVQLELIRMVLEREVDKKKKNVKRNNNEEIELHYSEGELRKELPNGVMEIAPVSTPCDVEFQSNGKTFIAPRYFRSKNVDRRVPFDNLQVLKKCGRKKCHCCQSSDSGNLIKCSNCQKELFCLDCIKRRYSETPNEVKMACPVCRGTCTCKYCRAGLCKDNESKDHLAGRNSVHRILHFHYLICMILPVLKQISEEQRTELETEAKNKGKNISDILIKQVEFGRKEKNNCNYCNSSILNLHRSCLSCSYSLCLRCCQALSQGSPFEHINSLVTEIPDKMDVCIDNESYLSDDNTISSDDVTDTSLLSDWTGCNGTTDSVSCPPTELGGCGNTHLDLRCVFPLSWIEEMETKAEEVVCSYEVPEILDKNSSCSLCSDKDHKTNRHKQSQEAARREDSNDNCLFYPTAFAISSDHCEHFQKHWGKGHPVVVRNVLRSTKNLSWDPLVMFCNYLEKSISRYENNKDLLEACLDWCEVEINIRQHFTGSLRCRPQKNDCDEMLKLNGWLSSQLFKKQFPDHFAQVIDALPLQEYMNPMSGLLNLAAYMPDESAKHDKGPYVHISYGCADKEACSVLNLSYEPYDVVDIMAYTTDAPLSPDHLTNVTKLLKRHQTLCQRGSPMNTTEQVEDKEQKETESIAMEGTDFYRRVNRTSWINEVKTIPSQRLEDNTSNNEECVSGSDSDSEKTQSSLPLQKTVQSTEMYSLAQWDVFRRQDEPKLLEYLKRHADEFSCASEHHGKKMVQPILDQSIFLDTTHKMRLKEEFNIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFMSPENVAECIQLTDEIHLLPEDHIAKVEMLEVRKMALNSVETAIKEIHELTSNPKA 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10582 945 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 13 942 IPR045109 GO:0032454|GO:0033169
Vifa1g10582 945 SMART cupin_9 604 906 IPR003347 -
Vifa1g10582 945 ProSiteProfiles JmjC domain profile. 613 906 IPR003347 -
Vifa1g10582 945 SUPERFAMILY Clavaminate synthase-like 795 934 - -
Vifa1g10582 945 ProSiteProfiles WRC domain profile. 11 55 IPR014977 -
Vifa1g10582 945 Coils Coil 98 118 - -
Vifa1g10582 945 Gene3D Cupin 495 915 - -
Vifa1g10582 945 MobiDBLite consensus disorder prediction 752 782 - -
Vifa1g10582 945 ProSiteProfiles Zinc finger RING-type profile. 189 235 IPR001841 -
Vifa1g10582 945 Pfam JmjC domain, hydroxylase 788 887 IPR003347 -
Vifa1g10582 945 Pfam WRC 12 52 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10582 Vifa-Chr1 1782022202 1782027533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10582 12 51 GRF Transcription Factor Family AT4G37740 52.500 3.23e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g10582 JmjC 4.8e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10582 K15601 - gmx:100799234 1145.18