Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10581 ATGGGAAGAACACCTTGCTGTGACAAGAATAATGGTCTCAAGAAAGGACCATGGACAACTGAAGAGGATGAAAAACTCATTGATTACATTCAAAAACATGGTTATGGCAATTGGAGAACACTCCCAAAAAATGCCGATTTGCAAAGATGTGGCAAAAGTTGTCGTCTTCGTTGGACAAATTATCTCCGACCGGATATAAAACGTGGTCGATTTTCATTTGAAGAGGAAGAAACGATAATTCAGCTCCATAGTGTTCTTGGAAACAAGTGGTCTACAATTGCATCTCGATTACCAGGAAGAACGGACAATGAAATAAAGAACTACTGGAACACTCACATTAGAAAAAGGCTTTTGAGAATGGGAATCAACCCGGTAACACATACTCCAAGACTTGATTTATTAGACTTCTCTTCAATTCTATGTTCATCTCTCTATGGCTCATCATCATCATCATTATCAACATCATCTCAAATCAACAACTTCCAAACACTCCTTAACATGCAACAACAACCATTGGTGAACCCTGAGCTTCTAAAACTAGCTTCCTCACTCTTCAACACCTCATCACACCACCACCAACAACAAGATTATAGTAATAATCAACCTTGTAATCCTCAAACACAAAACCAAGTTCCACTTTCACATTTTGTCCAATTCCAAGACCAAATCCAACAAGTACCTAGTACTAGTGTTTCTTCTTCATTTCCTAATAATCATTCACATTTGTTTGAACCAAATGTGAACACATATCCATTAAATTTCACCGACCATAGTAGTTACAACAATCAAGATTCTGTGCCTGATATTGATTGGTTGGAAAATAATGGGTTTGGTTTAAGTACTTTTAAAGAGGATTATATCCCTCAATTATCAAGCTATAATCAATATTATGGTTCTGATTATAATCAAAATCTTATGATTAACCAAACTTCAAACCAAGTTCTGTCAACACCATCTTCAAGTCCAACACCGATGAATTCGAACTCCACGTGTATCATTGGGAGCAATACAGAAGATGAGAAAGAAAGCTATGACAGTTGTAATAACAGAATAAAATTTGAAATCCCGTTGCATATTTTAGATTCTAATGAGTTCATGTAA 1101 0.3597 MGRTPCCDKNNGLKKGPWTTEEDEKLIDYIQKHGYGNWRTLPKNADLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGINPVTHTPRLDLLDFSSILCSSLYGSSSSSLSTSSQINNFQTLLNMQQQPLVNPELLKLASSLFNTSSHHHQQQDYSNNQPCNPQTQNQVPLSHFVQFQDQIQQVPSTSVSSSFPNNHSHLFEPNVNTYPLNFTDHSSYNNQDSVPDIDWLENNGFGLSTFKEDYIPQLSSYNQYYGSDYNQNLMINQTSNQVLSTPSSSPTPMNSNSTCIIGSNTEDEKESYDSCNNRIKFEIPLHILDSNEFM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10581 366 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vifa1g10581 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa1g10581 366 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa1g10581 366 SMART sant 14 64 IPR001005 -
Vifa1g10581 366 SMART sant 67 115 IPR001005 -
Vifa1g10581 366 MobiDBLite consensus disorder prediction 189 208 - -
Vifa1g10581 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Vifa1g10581 366 FunFam MYB-related transcription factor 14 67 - -
Vifa1g10581 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vifa1g10581 366 FunFam Transcription factor MYB39 70 131 - -
Vifa1g10581 366 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vifa1g10581 366 CDD SANT 70 113 IPR001005 -
Vifa1g10581 366 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vifa1g10581 366 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vifa1g10581 366 CDD SANT 17 62 IPR001005 -
Vifa1g10581 366 Gene3D - 14 67 - -
Vifa1g10581 366 Gene3D - 70 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10581 Vifa-Chr1 1781368207 1781369548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10581 1 366 MYB Transcription Factor Family AT4G21440 51.175 2.59e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g10581 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10581 K09422 - gmx:778071 426.402