Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10573 ATGCAAACGAGGTATATGGAGAGATCGAATAGTATGGCGAGGGAGAAACGAAGCTTAGATTCGACTTCGACTGAGGAAGATCAGCCTGAGAGGAAACGACCAGCTCTAGCTAGTGTAATTGTTGAAGCCCTGAAGGTCGACAGTCTGCAGAAACTTTGCTCATCACTGGAGCCTATTCTACGAAGAGTTGTTAGCGAAGAAGTGGAGCGCGCTTTAGCAAAATTAGGCTCTGCCAATCTTACTGAGAGATCTTCTCCAAAGCGCATAGAAAGTCCAGATGGAGGAAATTTACAGTTACAATTTAGGACCAGGCTGTCTCTTCCCCTCTTTACTGGTGGGAAAGTGGAGGGCGAGAAGAGCACTGCCATACATATTGTCTTGATTGATGCAAACACAGGCCGTGTTGTCACATCCGGTCCAGCGTCATGTGTCAGACTAGATGTTATTGTACTTGAAGGGGATTTCAATAATGAGGATGACGATGCTTGGAGTCAAGAAGAATTTGAGAGCCATGTTGTGAAAGAGCGAGAAGGAAAACGACCTCTTCTGACTGGTGATCTGCAAGTGACCCTGAAGGAGGGTGTAGGAACACTGGCTGATCTTACCTTTACGGACAACTCTAGCTGGATAAGAAGTCGGAAGTTCAGGCTGGGGCTAAAAGTTTCCTCGGGTTGTTGTGAGGGAATACGTATTCGTGAAGCCAAAACAGAGGCTTTCACTGTTAAGGATCACCGTGGAGAATTATACAAGAAACACTATCCACCTGCCTTGACTGATGAGGTATGGAGATTGGAGAAGATTGGCAAGGATGGATCCTTTCACAAAAGGCTAAATAAAGCAGGAATATGTTCCGTTGAAGACGTCCTTCAGCTTGTGGTTAGAGACCCACAAAGATTGCGGAATATTCTGGGGAGTGGCATGTCAAATAAAATGTGGGAAGTTCTTGTGGAACATGCAAAGACTTGTGTCCTCAGTGGAAAACTCTATGTATACTATCCTGATGATGCAAGGAATGTTGGTGTTGTTTTCAATAATATCTACGAGTTGAGTGGCCTGATCACCAATGACCAATATTACTCTGCTGATTCTCTCTCTGATAGCCAAAAGGTTTATGTGGACACATTGGTGAAGAAGGCGTATGAGAATTGGATGCATGTTATTGAGTATGATGGCAAGTCTCTGTTAAATTACAATCAGAACAGGACTTTGAGTGCGGCCCAACATCAAGTTCCACTGAGTTCACATGACTATTCTACTTCAAACCAACTTGATCAGCAGATCTCTATCCCAAGTCTACCAGTTCATGTTCCTACAGGACAACCTTCAATGGATGCTGGTATAACAGTTGGAGGTTATCATCATGGTACTACTACCAGATTCTCAATGCAACCACAGAATGCTGATCTTAATTCTGCTCTTCAGTTTGGTAATACTGCCTTCCCTCTACAAAACCTGCTGATGAGTGCTCCACACCAACCTCAACTTCTAAGAAATGAAAATGAGTTGTCACTTGGTCCCCCACAATCAGCTACTCCTGGCTTTCAGACCGCCGGCCTTTCAGATCCTACTTATAGAGGATTTGAAGACTTCTTCCCGGAAGAGGATATTAGAGTTAGAAGTCACGATATGCTAGAAAATGAAGATATGCAGCATCTGCTCCGTATTTTTGATATGGGAGGACAACCTCATACTTCCTTTAATGCTCCTGAAGAAGCATATCCTTATTCATCTGCTTACATGCCTGCAACCTCCATGAACTACAATGTAGATGATGAGCGAAACCGTTCTTCAGGGAAGGCTGTTGTAGGCTGGCTCAAGCTTAAGGCAGCTTTGAGATGGGGTATTTTTATTCGGAAGAAGGCTGCTGAGAGACGGGCACAACTTGTTGAGCTGGATGACTCGTAG 1905 0.4425 MQTRYMERSNSMAREKRSLDSTSTEEDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGSANLTERSSPKRIESPDGGNLQLQFRTRLSLPLFTGGKVEGEKSTAIHIVLIDANTGRVVTSGPASCVRLDVIVLEGDFNNEDDDAWSQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLADLTFTDNSSWIRSRKFRLGLKVSSGCCEGIRIREAKTEAFTVKDHRGELYKKHYPPALTDEVWRLEKIGKDGSFHKRLNKAGICSVEDVLQLVVRDPQRLRNILGSGMSNKMWEVLVEHAKTCVLSGKLYVYYPDDARNVGVVFNNIYELSGLITNDQYYSADSLSDSQKVYVDTLVKKAYENWMHVIEYDGKSLLNYNQNRTLSAAQHQVPLSSHDYSTSNQLDQQISIPSLPVHVPTGQPSMDAGITVGGYHHGTTTRFSMQPQNADLNSALQFGNTAFPLQNLLMSAPHQPQLLRNENELSLGPPQSATPGFQTAGLSDPTYRGFEDFFPEEDIRVRSHDMLENEDMQHLLRIFDMGGQPHTSFNAPEEAYPYSSAYMPATSMNYNVDDERNRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10573 634 Pfam Calmodulin binding protein C-terminal domain 327 389 IPR046829 -
Vifa1g10573 634 PANTHER OS02G0177800 PROTEIN 13 549 IPR012416 GO:0005516
Vifa1g10573 634 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g10573 634 MobiDBLite consensus disorder prediction 9 33 - -
Vifa1g10573 634 Pfam Calmodulin binding protein-like N-terminal domain 97 244 IPR046831 -
Vifa1g10573 634 Pfam Calmodulin binding protein central domain 257 322 IPR046830 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10573 Vifa-Chr1 1779366117 1779371605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10573 1 633 Calmodulin-binding Proteins AT2G18750 62.058 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10573 - - gmx:100802994 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10573 1 1779366117 1779371605 Vifa1g10573 1 1779366117 1779371605 PCT