Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10569 ATGAACAATGCAATGGCAATATTAATGAAGGAGAAGGATACCGTAAAACCTCAACTTACAAACTCCAAAACCTCAACTTTCAAGCTCTCCAAGGAAGTTTCTGTTCTCGGGTCAGAGTTGCAAGAACATGATTTTATCAACCACACAAAGAACATGGTGGTGGGTTCATCTTCATCAAGTTTAGCTAATAGTGAGTCCAACAAAGAAGATAATATAAAAAAAAAGTTGTTGAATAATTTTTCATGCCAATTTTGTAAAAATCAATTTTCGTCCGCACAAGCATTAGGAGGACATCAAAACGCTCATAAAAAAGAGCGTGCCTTCACAAAATATGTTAAACAGGTAAACAATAATTTCGAGACTCATCATCATCCTTTACCTTACTACAATAATTATCCTAGTGTTTCTACAACTCATTATAATAGACCACTTGGAATTAATATGCAATCTATGATTCACAAGCCAAGGCCAAGTTATTCATGGATCTCACCTTCATTTAATTTTTGTCCGGCTTCTTCTACATGGACACCAATGCAAGAGATGGAAACCTTTTCTTTTCTTGATGGATTAAAGAATGAGACTCTTAATGCAAATAATGGAAATAGTGTAACTCCAACAAGGAATTTTCTTAAGAACTTAGAAGTTGGTCTTGGAGAGTCTTCAATAAGTATTGCTACAAAGTCAAATTCTATGGAAGATAATTCAATTGTCGTTGGCACAAGGGATCGTGATAATCATTGCATTAATTTGGAAGAAGCCTCTATTGTTGAATCGGTTGAGCTTGATTTGTCACTTAAACTTTGA 804 0.3458 MNNAMAILMKEKDTVKPQLTNSKTSTFKLSKEVSVLGSELQEHDFINHTKNMVVGSSSSSLANSESNKEDNIKKKLLNNFSCQFCKNQFSSAQALGGHQNAHKKERAFTKYVKQVNNNFETHHHPLPYYNNYPSVSTTHYNRPLGINMQSMIHKPRPSYSWISPSFNFCPASSTWTPMQEMETFSFLDGLKNETLNANNGNSVTPTRNFLKNLEVGLGESSISIATKSNSMEDNSIVVGTRDRDNHCINLEEASIVESVELDLSLKL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10569 267 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 267 IPR044246 GO:0009788
Vifa1g10569 267 Pfam C2H2-type zinc finger 80 105 - -
Vifa1g10569 267 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
Vifa1g10569 267 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Vifa1g10569 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10569 Vifa-Chr1 1778558165 1778558968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10569 80 155 C2H2 Transcription Factor Family AT5G10970 42.500 1.36e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10569 - - psat:127082596 333.569