Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10565 ATGGCTACCGCTCCACCCCGTGAACTGTCTCAGAAGGAATCCGACATCCAGATGATGTTGGCCGCCGACGTCCACCTCGGAACCAAGAATTGTGATTTCCAAATGGAGCGTTACATCTTTAAACGCCGAAATGACGGTATTTACATTATAAATCTTGGAAAGACATGGGAAAAACTCCAACTTGCTGCTCGGGTTATTGTGGCAATTGAGAATCCTCAGGACATTATTGTCCAATCCGCTAGGCCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTATACTGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGAACTTTCACCAATCAGCTTCAAACTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACTGACCCAAGAACTGATCATCAGCCAATCAAAGAAGCTGCTCTTGGAAATATTCCCACTATTGCATTTTGTGACACTGATTCTCCTATGCGGTATGTTGATATTGGAATTCCTGCCAACAACAAGGGAAAGCATAGCATAGGTTGTCTCTTTTGGCTTCTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCAGGCCTTAAGTGGGACGTGATGGTGGATCTATTCTTCTATAGAGAACCTGAAGAAGCCAAGGAGCAAGAGGAGGATGAAGTCCCTCCCACAGAATATGTCATTGCCGACTTCAATGCAGGTGCTCCATCTGATGGTCAGTGGCCCACTGCAATTGATCACTCATGGACTGATGCTGCACCACAGCCTATTCCAGCAGTTCCAGCAGTCAACTGGACAGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGACGCTGTTCCAGCACCACAACAAATTCCCACTCCCGGAATTGAATCTGTGCCAGCAACCGGTTGGGATTAA 894 0.481 MATAPPRELSQKESDIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPPTEYVIADFNAGAPSDGQWPTAIDHSWTDAAPQPIPAVPAVNWTAPEAVAGDWGDAVPAPQQIPTPGIESVPATGWD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10565 297 PANTHER 40S RIBOSOMAL PROTEIN SA 5 283 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa1g10565 297 NCBIfam 30S ribosomal protein S2 12 207 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa1g10565 297 Pfam Ribosomal protein S2 19 113 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 Pfam Ribosomal protein S2 118 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 Hamap 40S ribosomal protein SA [rps-0]. 3 276 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vifa1g10565 297 SUPERFAMILY Ribosomal protein S2 11 201 IPR023591 -
Vifa1g10565 297 PRINTS Ribosomal protein S2 signature 46 55 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 PRINTS Ribosomal protein S2 signature 16 34 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 PRINTS Ribosomal protein S2 signature 95 112 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 PRINTS Ribosomal protein S2 signature 158 172 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 PRINTS Ribosomal protein S2 signature 137 148 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 PRINTS Ribosomal protein S2 signature 120 137 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 MobiDBLite consensus disorder prediction 275 297 - -
Vifa1g10565 297 Gene3D - 15 219 - -
Vifa1g10565 297 ProSitePatterns Ribosomal protein S2 signature 2. 120 144 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 CDD RPS2 19 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g10565 297 FunFam 40S ribosomal protein SA 15 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10565 Vifa-Chr1 1778532764 1778534627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10565 7 297 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.696 2.06e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10565 K02998 - gmx:548014 531.561