Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10564 ATGGCTTCTGCTCCTTCTTCGTCTTCTTCTTCTTCTTCTAAACTTTGCTTCAATTCTGACTGCAAGGACTTCAAGTCTGAAAGACCTAAGAAAGGTTGGAGACTACGTACTGGTGACCTAGCCGAACTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGAAAGCGAATTCATTGTGGGTGTATTATTTCAAGTAACACCTTCGTGTTGTTGGATCCCGGAGGAATTGAGTGTTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAATCTGCCATGGCCGCAATCTTTATCTCTTCAAAATCGTTTATCGGAGAGGCTTAGAGACATATCTTCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTATTCAATCCAGCTTCTTCATCTGACATGCCTCCAGACGGGCACTCTGTCGTTGAGTTACCAAATAACTTTGACAAAATTTATGGTAATGAAAGGTTACCAACCTCATCCTTGGAAAAGAAAAATGAAGATTTTTCTGGAATATCGGCTAATTGGAATGTCAAACTTGGTTCAAGGGAAATGGTGCTTATGAATGGAATGAGGAACGAGGACAAATCAAGTCCGTGTATAAATATGTGCCAACAGCATCATTCCCTTAAGGAAGATTCATCTTCTCAACCATTTGGTTTATCTGTACCTTATTCATCCCCAAATGAAAGAAATGGTCTAATTGGGGTAACTGGAATTCATTCACAACAAACTCCACCTCATCCAGGCAAGCAATTTAGTGGCACAATGCATTTAGCTCTTGACTCATCAAATGAAGCTCAGGTTCGCAATGGACGACCTCGAGCAGATGCCCGAGGAAGAAGCCAGTTGTTGCCACGTTACTGGCCCAGGTGTACTGAGCTGGAGCTACAACAAATATCTATCGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCCGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAAGGAGTAACTCCTTGCATACAATCCATGCAGCTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCAATGCCACCTGATCAGGATAATGAAGCCAATAAGACTGGAAATGGATTTTCTGCACATGAAGTTGAATTGGGTGATCCTAGTTCTTGGTCAAAAATTGATAAGTCGGGATACATTGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAATGACGATATAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTCCAAGCATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCAACTATTTTCACTAGTGATAATATGGGTGAAAGGATTCAGTGGGCTCAATGTGAAGATTGTCTGAAGTGGCGCAAATTGCCAGCATGTGCACTTCTTCCATCAAAATGGACGTGTTCTGATAATTCTTGGGATCCAGAAAGGTCTTCTTGTTCAGTCGCACAAGAGCTTACATCAGAACAACTTGAGAATCTGTTACCCCCTTCTGGTTCCAAGAAAATGAAGGCTGTTAAGCAGGATCCTGATCATGCCGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCTATCCTGGGGGAAGGGGAGGCTCTCCCGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCCTGCATTGTGTGCATCCAGCCTCCAAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGCTACGGCGCGAGAAGAAGCAATCAGAAAGAGAAGCAGAGACAACACGTAAGAAGATGCAGCAACAGAATTCTCAGCAATTGCCTTCATCTGAGATTTTGCTCGATGATGATTCTTTGCATAATAGTAATACGGGTGATAGTAGCCCAAACATGAATAAGGATGGTAATGACGGTTCCGATGATGATCCTCACCGGATAAAATCATCGGTGTCTCCGTTTAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCACCTGGTTCAGATTCTGGTGTAGTGAAGCTGCTCCACGATGCAACTGAGATGTACCTCAAGCAGCAGCAGAATGTGTTGAACTCTGGTACCGGAGATTCATCAGGTAGTCAGTCACAGCATGTAGGAGATGTAGTGAGAGAAGAGAAGCTTAGCAATGGTGTTATCCATGGTAGCAGTAGTCATAATGCAGATAAGGAACATACTCAGTCTTTGCCTATGAACGTGTGA 2646 0.4365 MASAPSSSSSSSSKLCFNSDCKDFKSERPKKGWRLRTGDLAELCDRCGSAFEEGRFCDIFHANASGWRNCETCRKRIHCGCIISSNTFVLLDPGGIECFTCARKNIILPSNLPWPQSLSLQNRLSERLRDISSKSWSQLAGSGPVPWKQAPSLFNPASSSDMPPDGHSVVELPNNFDKIYGNERLPTSSLEKKNEDFSGISANWNVKLGSREMVLMNGMRNEDKSSPCINMCQQHHSLKEDSSSQPFGLSVPYSSPNERNGLIGVTGIHSQQTPPHPGKQFSGTMHLALDSSNEAQVRNGRPRADARGRSQLLPRYWPRCTELELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPPDQDNEANKTGNGFSAHEVELGDPSSWSKIDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENDDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTSDNMGERIQWAQCEDCLKWRKLPACALLPSKWTCSDNSWDPERSSCSVAQELTSEQLENLLPPSGSKKMKAVKQDPDHAEALEGLDTLANLAILGEGEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKMQQQNSQQLPSSEILLDDDSLHNSNTGDSSPNMNKDGNDGSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGVVKLLHDATEMYLKQQQNVLNSGTGDSSGSQSQHVGDVVREEKLSNGVIHGSSSHNADKEHTQSLPMNV 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10564 881 MobiDBLite consensus disorder prediction 859 881 - -
Vifa1g10564 881 CDD B3_DNA 338 439 IPR003340 GO:0003677
Vifa1g10564 881 Coils Coil 718 741 - -
Vifa1g10564 881 Gene3D - 318 444 IPR015300 -
Vifa1g10564 881 MobiDBLite consensus disorder prediction 734 770 - -
Vifa1g10564 881 ProSiteProfiles B3 DNA-binding domain profile. 340 441 IPR003340 GO:0003677
Vifa1g10564 881 MobiDBLite consensus disorder prediction 832 847 - -
Vifa1g10564 881 Pfam CW-type Zinc Finger 572 614 IPR011124 GO:0008270
Vifa1g10564 881 MobiDBLite consensus disorder prediction 716 795 - -
Vifa1g10564 881 ProSiteProfiles Zinc finger CW-type profile. 567 617 IPR011124 GO:0008270
Vifa1g10564 881 MobiDBLite consensus disorder prediction 832 881 - -
Vifa1g10564 881 SUPERFAMILY DNA-binding pseudobarrel domain 337 441 IPR015300 -
Vifa1g10564 881 Gene3D - 571 624 - -
Vifa1g10564 881 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 13 840 - -
Vifa1g10564 881 SMART B3_2 340 440 IPR003340 GO:0003677
Vifa1g10564 881 FunFam B3 domain-containing transcription repressor VAL1 318 445 - -
Vifa1g10564 881 MobiDBLite consensus disorder prediction 718 733 - -
Vifa1g10564 881 Pfam B3 DNA binding domain 340 439 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10564 Vifa-Chr1 1778362267 1778371719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10564 270 722 B3 DNA Binding Superfamily AT4G32010 55.556 2.53e-162 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g10564 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10564 K09287 - gmx:100782114 1539.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10564 1 1778362267 1778371719 Vifa1g10564 1 1778362267 1778371719 ECH