Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10544 ATGGGGTTTTCGAATTCGGAGTTGCATGTGCGAATTTTTGTTACCTCCATGATCGTGATTCTAATGCGAACTTTTTCTGTTGCAGAGACTGACCCTGTTGATGTTGCAGCAATCAATAGTCTATATGTCGCGATGGAGTCACCAGCTCTTTCAGGGTGGAAGCCTGAGGGAGGGGATCCATGTTTAGAAGCTTGGCTAGGTGTGGAATGTGTCTTCTCCAACATAACTTCCCTACGACTGGGAGGCTTGAATTTGGGTGGAGAGCTCGGCAGTAATTTGGATTTCCCATCAATTATGGAAATTGATCTTAGCAACAATCACATTGGAGGTGCCATTCCATTCACTTTACCGCCTACTCTTACGAGCTTGTCTCTCGCAAGAAACCGCTTAAATGGAAGCATTCCTGATGCCTTATCCTTATTATCTCAATTGGCAAGCTTGGATTTGGCCGATAACAACTTGACCGGCCAGCTGCCTTCCTCAATGGGGAGTTTATCATCTCTTACATCAATACGGTTGCAGAACAATCAACTCGGAGGAACCCTTTTAGTTTTGCAGGACCTTCCTCTTCAGGAACTGAATATAGAGAATAATTTATTCTCTGGTCCAATTCCTCCGAACATATCTAACATCCCTAATTTGAAAAAAGACGGGAATCCATTTAATACTACTATTATTCCGACGCTGCCTGCTTTAGCCCCCTCACCTGTAGTTACCGGTCTATCTCCCGAAGAATCACCTTGGCATGTGGTTTATAGTCCTTCTGACTTCCCATCACCGGCGCCTGGAAATGTTAAGAAGTCTTTCCTAGCTAAGCATGGCTTTTGGATTGCCGGTGCCGGAGTATTAATATTTATCGCGTTGGGGATTTGTGTTTGTACGGCGTGGTGCTGTAAGAGAAAGCTGAAAGATAAAAACTCTCAGAAGCTTGATGTGGAGGCTTTTCCAAATACTTTGCATAAACCTACTCACAACGACTTTGTTATCCAAGCAACTAATCAAGATCAACAAGCTGAGAAAACATCACGGTTCAATGAAGTTCCGAATAGGAGAACGAATTCGGTTCCAAAGGTTCAGGATGAACAAGATCGATATGTCAACAATGTATCTGCAACTTCGGAATACAATAATGTCTCCAAACCTTCGCTCCTGCAGCCACCGCCACATCCTCTGCCGATAGTTCCCATTGAGAAGGTCACCGTCAATTCCGCAGTAACTACCAATGCTAGTGAACGAAAAATTATAACAAGTTCCGTCGAAATGTATACTGTTGCATCACTTCAACAATATACAAATAGTTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTCGGATCTGTTTATAGAGCCGAGCTCCCTGATGGAAAGCTATTGGCGGTGAAGAAACTGGATACTAGAGCTTTCAAGGACCAGACCGACGAACAGTTTCTTCAATTGGTATCTAGCATCTCAAAAATCCAGCATGTCAATATTGCAAAGCTTGTGGGCTACTGTGCTGAGTATAACCAACAATTACTTATATATGAGTATTGCAATAACGGAACCCTACAAGATGCACTTCACGGTGATGACGAACATTGTATTAAATTTCCATGGAATGAACGCATTAAGGTCGCACTTGGTGCTGCAAGGGCTTTAGAGTATCTGCACGAGAATTTCCAGCCGCCTATTGTACATCGAAATTTTAGGTCTGCTAATGTTCTCTTGAATGAAAAGTCGGAAGTGTGTGTCTCTGATTGTGGATTAGGTCATTTGCTATCTTCTGGCGCTGTTGGCCAGTTATCTGGTCGCCTCCTCACAGCTTACGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGACGTGTTTAGTTTCGGGGTTGTAATGCTAGAACTTCTCACGGGAAGAAAATCGCACGACAGGTCACGGCCTCGCGGAGAACAATTTTTGGTGAGATGGGCAGTACCACAACTACATGACATTGATGCATTGTCGAAAATGGTTGACCCTCACTTAAATGGATCATATTCTATGAAGTCATTGTCACGTTTTGCAGATATTGTTTCGTCGTGTATTCAGCGTGAACCTGAATTCCGGCCAGCTATGTCTGAAATTGTTCAGGATCTCTTGCTAACGATGTAG 2139 0.4334 MGFSNSELHVRIFVTSMIVILMRTFSVAETDPVDVAAINSLYVAMESPALSGWKPEGGDPCLEAWLGVECVFSNITSLRLGGLNLGGELGSNLDFPSIMEIDLSNNHIGGAIPFTLPPTLTSLSLARNRLNGSIPDALSLLSQLASLDLADNNLTGQLPSSMGSLSSLTSIRLQNNQLGGTLLVLQDLPLQELNIENNLFSGPIPPNISNIPNLKKDGNPFNTTIIPTLPALAPSPVVTGLSPEESPWHVVYSPSDFPSPAPGNVKKSFLAKHGFWIAGAGVLIFIALGICVCTAWCCKRKLKDKNSQKLDVEAFPNTLHKPTHNDFVIQATNQDQQAEKTSRFNEVPNRRTNSVPKVQDEQDRYVNNVSATSEYNNVSKPSLLQPPPHPLPIVPIEKVTVNSAVTTNASERKIITSSVEMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDTRAFKDQTDEQFLQLVSSISKIQHVNIAKLVGYCAEYNQQLLIYEYCNNGTLQDALHGDDEHCIKFPWNERIKVALGAARALEYLHENFQPPIVHRNFRSANVLLNEKSEVCVSDCGLGHLLSSGAVGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDRSRPRGEQFLVRWAVPQLHDIDALSKMVDPHLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10544 712 Gene3D Ribonuclease Inhibitor 35 234 IPR032675 -
Vifa1g10544 712 Gene3D Phosphorylase Kinase; domain 1 396 511 - -
Vifa1g10544 712 Gene3D Transferase(Phosphotransferase) domain 1 512 710 - -
Vifa1g10544 712 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 399 511 - -
Vifa1g10544 712 ProSiteProfiles Protein kinase domain profile. 434 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10544 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 152 - -
Vifa1g10544 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 708 IPR046959 -
Vifa1g10544 712 SUPERFAMILY Protein kinase-like (PK-like) 412 709 IPR011009 -
Vifa1g10544 712 SUPERFAMILY L domain-like 33 215 - -
Vifa1g10544 712 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Vifa1g10544 712 Pfam Protein tyrosine and serine/threonine kinase 437 708 IPR001245 GO:0004672|GO:0006468
Vifa1g10544 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 512 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10544 Vifa-Chr1 1774108224 1774112333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10544 20 709 Strubbelig Receptor Gene Family AT4G03390 49.465 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa1g10544 PK_Tyr_Ser-Thr 6.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10544 - - gmx:100793423 940.258