Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10538 ATGGCGGATGATAAATTTCAATTTCCGACACTGTTTGGGGAGGATGGAGAGGACTCCGATGATGAAAAGCTGGTGATGGATATCGAGTCCTTTCTCAGCGTTCTTGATGAAGATTGTGTTCCTTCTGAGAGTAGTCACGAGGATTATTCATTGAAAGACGTTTCGCCTGGTGAATCTGGGACCCATGATAATTTTTTACTTCAAAATGGGAATTCTTCCATGCTTGACTACGAACATGAAAACCGAGGACCTTCATCAGAGACCTGCTATTCCCCAAATGCTTTTGCTGGTGGTTACAGGGACTCATTCTCTGTTGTTGAAAGTGATGAAACTTGCTATGTAGAAAGGGCAGGAGTTTCTGAACGCGAGATGCCTTTTTACAGTACAGACACAAGTTTTGCTGAAGCAAATTCAAATGCTGTAACTGTTTGTAGAGATAATTTGAACTCGAGTCTGTGGAAGGGTCACAATACTAGCCAAATCAAGCATGTGGCAGATGATGTAGAATCTGAATATGCTTCTCACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGCAAATTATGGAACGGCTTTGAAAGACATTATTGGAGTTTCTAGGCAGCAGGAAAATGACTCATGTACTACTTCTGAAATGCCATTTGTGGATGTTGACATGCCTACACATTTTGGAACTTCAACTGATTCTACTTTTTGTCAAGAGACAACAATGAACATGAAGGTTGAAAAAATGGAGTTCTTAACTGATTCTGCAAATATGATTGGCGGCTTGCATTTCAATACGGTTGGTCCGGTCCCTTTTCAGGACAGGCAATTTATGCCAACAGATAGTGAATATCCTTCATTTTTTCCTGGTAATGTTATATTTGAAGACAGTGAATCGGTTCAACAGTCATCTTGTGCTCCATATATTTCTTGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGGTATGCCTTTCCAAAATACTTTTCACAATGACCATGCCGAGTTAAATGCTGGTCTTGGGGTGAAACAATTACCTGGAAATACGGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTTTCTATTGCCCGGGCATCAATTACCAACGGGAAGCATTATAACTGTGGTATGAGCGAACTAGAGAGTAAACCAAGCGAATATAAAAGTATTGATGATTCACAACTTTCCAGAAGTACTGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAACTATATAATTCTCTTAATATGTCACAATCTTCTAGATTTGACTATACTAAACCCAATATGGCGGGAAACACAAGACCCAAGCCACACGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTGTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGCTGTTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTTTCAACTATTTCTTTAATACTAAAGGAAAGGCCTCCATTGCTCAAGACGTGCAAAAGTGCACAGAAAAGTGTATTAGAAACCTTGGATTTGGACGATGACCCACTTCCTGAGAATGGTGTAGTGAAGAAGGAATCTAATGCGTGTCAAGATACATCTAACAGAAATGCAATCACAGGTGTGAATTTGTCGGTGCACACAAAGGGAAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCTGACGAACTGCATAATAAAGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGTAGTCGAACCAAAGATCCTTATGAACTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGACGGAGAAAAAGAAACTTATGAAGATCAAGCTATGCCGAGTAAGAAAAGGAAATGCCCTCCTAGTTCAAAAAGTGGCAAGAAGAAGAAGGGTTTGGACAGCATGATGCTTGAGGAGTCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCATTCTGTTCAACAATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTGCAAACTATCTTAAAGACGATCATGTTACGTAGGACAAAAGGCTCACTTCTTGATGGGGAGCCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCCTGCGACCACCCTCAGCTTGTTAAGTGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGCCATGAAGCTTCCTCGGGAAAAACAGCTATTTCTTTTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATGCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAATCAGTGCATTTCTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAACTGCAAAACTCGACTTAACATGTCTTCAGTGTTTCCCAAAGCCACACTGAACAGTTCTTTATCTGACCAGTCTTGTGATCTGTTGCTTGGTTACTCTGGTTCTGAGGTTGAGGATTCTGAACCTTGTTCTCAGACTAAGCCATATAATTCTTCAAAAATAAAAGCTGCACTTGAGGTGTTGCAGTCATTGTCAAAGCCGCAATGCCGGACTTCCCAAGAAAATTGTGTCCCAAGCACTTCTAAAGAAAGTACTGATTGCAGCTCCACATCTGCTGACAGTGGAAAATCTTTTAGTGATGTTCCCATAAAGAAAACTATGTTAATGGAGAAAAGCTCTAATGGTGCAATTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTCGATTTACTTGAAGCGTGTCTTGAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCGTTGCAAGAGATAAAGCTGTTAAGGATTTTAACACACTCCCTGAGGTAACAGTTATGATAATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAACATGGTGGCAGCCTGCCATGTTCTCATGCTCGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGTCTAACTGTCAAAGATACGGTTGAAGACCGTATTTTAGCTCTGCAGGAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGAAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3720 0.4175 MADDKFQFPTLFGEDGEDSDDEKLVMDIESFLSVLDEDCVPSESSHEDYSLKDVSPGESGTHDNFLLQNGNSSMLDYEHENRGPSSETCYSPNAFAGGYRDSFSVVESDETCYVERAGVSEREMPFYSTDTSFAEANSNAVTVCRDNLNSSLWKGHNTSQIKHVADDVESEYASHSSIIENVDGTFANYGTALKDIIGVSRQQENDSCTTSEMPFVDVDMPTHFGTSTDSTFCQETTMNMKVEKMEFLTDSANMIGGLHFNTVGPVPFQDRQFMPTDSEYPSFFPGNVIFEDSESVQQSSCAPYISCEGQSFNVKAEGDEMGMPFQNTFHNDHAELNAGLGVKQLPGNTGNLNFRSLDKSLSIARASITNGKHYNCGMSELESKPSEYKSIDDSQLSRSTEGSNDEDDCDVCIIEDISHPAPTSRSAELYNSLNMSQSSRFDYTKPNMAGNTRPKPHDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTISLILKERPPLLKTCKSAQKSVLETLDLDDDPLPENGVVKKESNACQDTSNRNAITGVNLSVHTKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDGEKETYEDQAMPSKKRKCPPSSKSGKKKKGLDSMMLEESARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQTILKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPQLVKCYNSTTLWKSSVETAMKLPREKQLFLLKCLEASLALCGICNDAPEDAVVSVCGHVFCNQCISEHLTGEDNQCPATNCKTRLNMSSVFPKATLNSSLSDQSCDLLLGYSGSEVEDSEPCSQTKPYNSSKIKAALEVLQSLSKPQCRTSQENCVPSTSKESTDCSSTSADSGKSFSDVPIKKTMLMEKSSNGAIGSLGEKAIVFSQWTGMLDLLEACLENSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQEKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10538 1239 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 503 771 IPR014001 -
Vifa1g10538 1239 CDD DEXDc_SHPRH-like 488 809 - -
Vifa1g10538 1239 Pfam Zinc finger, C3HC4 type (RING finger) 925 961 - -
Vifa1g10538 1239 MobiDBLite consensus disorder prediction 41 64 - -
Vifa1g10538 1239 Gene3D - 579 667 IPR038718 -
Vifa1g10538 1239 Gene3D - 699 810 IPR038718 -
Vifa1g10538 1239 MobiDBLite consensus disorder prediction 385 407 - -
Vifa1g10538 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 817 1238 IPR027417 -
Vifa1g10538 1239 ProSiteProfiles Zinc finger RING-type profile. 925 964 IPR001841 -
Vifa1g10538 1239 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 356 1238 - -
Vifa1g10538 1239 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 579 667 - -
Vifa1g10538 1239 Pfam Helicase conserved C-terminal domain 1084 1181 IPR001650 -
Vifa1g10538 1239 MobiDBLite consensus disorder prediction 1034 1058 - -
Vifa1g10538 1239 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 690 821 - -
Vifa1g10538 1239 SUPERFAMILY RING/U-box 922 981 - -
Vifa1g10538 1239 MobiDBLite consensus disorder prediction 662 701 - -
Vifa1g10538 1239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 918 976 IPR013083 -
Vifa1g10538 1239 MobiDBLite consensus disorder prediction 662 682 - -
Vifa1g10538 1239 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g10538 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 809 IPR027417 -
Vifa1g10538 1239 Gene3D - 824 1238 IPR027417 -
Vifa1g10538 1239 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1234 IPR001650 -
Vifa1g10538 1239 SMART ultradead3 484 786 IPR014001 -
Vifa1g10538 1239 ProSitePatterns Zinc finger RING-type signature. 940 949 IPR017907 -
Vifa1g10538 1239 Gene3D - 459 552 IPR038718 -
Vifa1g10538 1239 Pfam SNF2-related domain 508 887 IPR000330 GO:0005524|GO:0140658
Vifa1g10538 1239 CDD SF2_C_SNF 1079 1191 - -
Vifa1g10538 1239 SMART helicmild6 1098 1181 IPR001650 -
Vifa1g10538 1239 SMART ring_2 925 963 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10538 Vifa-Chr1 1771982936 1771991634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10538 411 1238 RAD5 or RAD16-like Gene Family AT1G61140 63.810 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g10538 SNF2_N 1.3e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10538 - - gmx:100805307 1583.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10538 1 1771982936 1771991634 Vifa1g10538 1 1771982936 1771991634 PCT