Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10535 ATGAAGAGACTCACCACCTCAGATTCTTCATCTCCTCTCATCACAATCTCTCCCTCAACAGAAGAACATAGTCCGAGGAACAAACATGTGTATGGTATGGAGTTTCAATCCATGATGTTGGATGGATTTGAAGAGGAAGTTTGTGTTGAAGAAGCGGGTCATCATTCGGAGAAGAAACGACGACTGAGAGTGGATCAAGTGAAGGCTTTAGAGAAAAACTTTGAAGTTGAAAACAAGCTTGAACCTGAAAGGAAGGAGAAGCTTGCCATAGAACTTGGGTTGCAGCCCAGACAAGTTGCTGTTTGGTTCCAAAACCGGAGGGCAAGATGGAAGACAAAACAGTTGGAACGAGATTATGGTGTTCTTAAAGCTAATTACGATGCTCTTAAGCTCAAGTTAGATGCAATTACACAAGACAACAAAGCTTTTCATAAGGAGATTAAGGAATTAAAATTGAAGCTGGAAGAAGAAGAAAAAAGTGCAAGCAGTGTTTTGGTGAAGGAGGAGATGATAACAATGCCTGAATCTGATGAAACCAACTCACAACCCTCAGCATAA 558 0.4104 MKRLTTSDSSSPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEVCVEEAGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKLDAITQDNKAFHKEIKELKLKLEEEEKSASSVLVKEEMITMPESDETNSQPSA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10535 185 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g10535 185 SMART HOX_1 56 117 IPR001356 GO:0003677
Vifa1g10535 185 MobiDBLite consensus disorder prediction 158 185 - -
Vifa1g10535 185 SUPERFAMILY Homeodomain-like 49 115 IPR009057 -
Vifa1g10535 185 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vifa1g10535 185 Gene3D - 52 120 - -
Vifa1g10535 185 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g10535 185 CDD homeodomain 58 114 IPR001356 GO:0003677
Vifa1g10535 185 Coils Coil 112 167 - -
Vifa1g10535 185 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 164 IPR045224 GO:0003700
Vifa1g10535 185 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Vifa1g10535 185 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Vifa1g10535 185 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Vifa1g10535 185 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vifa1g10535 185 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Vifa1g10535 185 FunFam homeobox-leucine zipper protein ATHB-6-like 61 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10535 Vifa-Chr1 1770247576 1770248133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10535 1 185 Homeobox Transcription Factor Family AT4G40060 56.250 4.68e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g10535 Homeodomain 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10535 K09338 - gmx:100777924 229.95