Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10531 ATGAGTTTCATGGCCTTCTTTGTGTTTTCCATGAATCACAATGCAAACGTTTCTCTTGTCACCGCTTTGTTTATACTCTTCCTCTCTACATTCTCTCACTCATACGACCTTCAAATTCTTTTGAACTTTAAATCTTCAATTCAGACTTCTGATTCAAATGTTTTTGCTTCATGGAACTCATCTAACTCACCTTGCAATTTCTACGGAATTCTTTGCAATTCCAAACATTCTGTTAAGCAAATAAACCTTCCAAACAAATATCTCACCGGCATTCTTCCTTTTGACATCATATGTAGTCTTCCGTGTCTTGAGAAAATTTCTCTGGAGTCCAACTTTTTGCATGGAAATATCACCAAGGGTTTGAAAAATTGTACAAACCTCAAGTACTTGGATTTAAGTGAAAATTCATTCAATGGTCCACTTCCCGAGTTTTCATCTTTGATTAAGTTAGAGTACTTGAATCTAAATTTAAGTGGAATTTCAGGGATATTTCCATGGAAATCATTGCAAAATCTGACAACACTCACTTTTTTAAGCCTTGGTGATAATCCATTTGAAAAAGCCTCCTTTCCTTTGGAGATTATAAAGCTTGAAAATTTGAATTGGCTTTATCTATCCAATATCAGCATTTTTGGAAAAATCCCATTTGGTATTGGAAATCTCACTCAGCTTCAGTATCTTGATCTTTCTTACAACAATTTATTTGGTGAGATTCCACGTGATATTGGAAAGCTCAAGAATCTAAGGCGACTTGAGATATACGATAACAATTTGAGCGGAAAATTTCCATTTGGATTTGGCAAACTTACCAGTCTTGTTCGATTTGTTGCTTCAACGAATCAGCTAGAAGGTGATCTTTCTGAGCTAAAGTCCTTGAAGAATCTTCAAATTCTATATCTTTTCCAAAACAAATTCTCAGGAGAGATTCCACAAGAACTTGGAGATTTCAAGAGTCTAACCGACCTTTCGCTATGTCAGAACAAACTCACTGGTTTTCTTCCACAGAAGCTTGATTCTTGGGTTGGAATAAAACGGATAGATGTTTCGGATAATTTGCTTTTCGGTCCTATTCCACCCCACTTGTGCAACAATAACCAGATTACTTATATGTCATTGTTGAATAACAGCTTCACGGGAAGTATACCAGAGAACTATGCAAATTGCACCGCTTTAGTACATTTTAGAGTATCAACGAATTCACTTTCAGGTGTTGTTCCTTCAGGTATATGGGGCCTGCCAAATATGGAAGTGTTTGATCTTGGAAGGAACCAATTTGAAGGTTCAATATCTCCTGATATTGGTAAAGCGAAATCTCTATCGCAACTCTTTTTATATGATAATAATTTCTCAGGTGTTCTTCCTGATTCTATCGGAAGCTGTGTTTCTCTTAGTGAAGTAAACCTTGCTGAAAATTTCATTTCTGGAATAATTCCAAATAATATTGGTGCTTTGCATACACTTAATTCGTTGAATTTTTCCTCAAACAAGTTATCTGGTGAGATTCCATGGAGTTTATCATCTCTTGAACTTAGCCAGCTTGATTTATCACACAACCAGTTTTTTGGTTCCATACCAAACTCACTAGCTATTCCAGCTTTCAAAGATAGTTTCATGGGAAATCCTCGCTTATGCAGCAACATTTTGAAGAACTTTCGACCATGTCCATCTGGCAGCTCGAAGAGACTCCGAAACCTCCTGTTCTTTTCCATTGCCAGCGTAATCATGGTTCTGGTTGTTTCGTTAGCATATTTTCTCTTCAGGAGACATAAACAGAAGCAAGTATTTATGAATATTTCTTGGAATTTCAAGCAATACCATATATCAAACATTAACCAGAATGAAATTATTGATGGAATCAAAGCTGAGAACATAATTGGAACAGGATCATCAGGGAATGTTTACAAGGTTGAGCTACAAAGTGGTGAAGCTTTTGCAGTCAAACGCGTGACTTCAAATTCACCTGAGTATGAAGCTGAGGTGGCTACCTTGAGTTCTATAAGGCATATGAATGTGGTGAAGCTGTATTGTAGTATCACAAGTGAAGACAGTAGTTTGCTTGTGTATCCGTTGTTACCAAATGGGAGTTTGTGGGAAAGGTTGCGTGAGGAGGAGACTCGGATGGGGTGGGAGGTTAGGTATCATATTGCATTAGGTGCAGCAAGAGGATTGGCATATTTGCATCATGGTTGTGATAAACCTATTATGCATAGGGATATTAAATCAAACGGAGAAGCTGGTAGTTCGTCTCAAGTCATTACTGGAACCCATGGCTACATGGCTCCTGAGTATGCCCACACTCGTAATGTGACGGAGAAGAGTGATGTTTATAGTTTTGGCGTAGTACTCATGGAGTTAGTGACCGGGAAGAAGCCTTTGGAGCCGGAGTTTGGAGAAAATAGGGATATTGTAAGTTGGTATACGGTAACACTATGA 2433 0.3781 MSFMAFFVFSMNHNANVSLVTALFILFLSTFSHSYDLQILLNFKSSIQTSDSNVFASWNSSNSPCNFYGILCNSKHSVKQINLPNKYLTGILPFDIICSLPCLEKISLESNFLHGNITKGLKNCTNLKYLDLSENSFNGPLPEFSSLIKLEYLNLNLSGISGIFPWKSLQNLTTLTFLSLGDNPFEKASFPLEIIKLENLNWLYLSNISIFGKIPFGIGNLTQLQYLDLSYNNLFGEIPRDIGKLKNLRRLEIYDNNLSGKFPFGFGKLTSLVRFVASTNQLEGDLSELKSLKNLQILYLFQNKFSGEIPQELGDFKSLTDLSLCQNKLTGFLPQKLDSWVGIKRIDVSDNLLFGPIPPHLCNNNQITYMSLLNNSFTGSIPENYANCTALVHFRVSTNSLSGVVPSGIWGLPNMEVFDLGRNQFEGSISPDIGKAKSLSQLFLYDNNFSGVLPDSIGSCVSLSEVNLAENFISGIIPNNIGALHTLNSLNFSSNKLSGEIPWSLSSLELSQLDLSHNQFFGSIPNSLAIPAFKDSFMGNPRLCSNILKNFRPCPSGSSKRLRNLLFFSIASVIMVLVVSLAYFLFRRHKQKQVFMNISWNFKQYHISNINQNEIIDGIKAENIIGTGSSGNVYKVELQSGEAFAVKRVTSNSPEYEAEVATLSSIRHMNVVKLYCSITSEDSSLLVYPLLPNGSLWERLREEETRMGWEVRYHIALGAARGLAYLHHGCDKPIMHRDIKSNGEAGSSSQVITGTHGYMAPEYAHTRNVTEKSDVYSFGVVLMELVTGKKPLEPEFGENRDIVSWYTVTL 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10531 810 Gene3D Ribonuclease Inhibitor 34 191 IPR032675 -
Vifa1g10531 810 Gene3D Ribonuclease Inhibitor 288 555 IPR032675 -
Vifa1g10531 810 PRINTS Leucine-rich repeat signature 127 140 - -
Vifa1g10531 810 PRINTS Leucine-rich repeat signature 221 234 - -
Vifa1g10531 810 Gene3D Transferase(Phosphotransferase) domain 1 743 809 - -
Vifa1g10531 810 Gene3D Ribonuclease Inhibitor 192 287 IPR032675 -
Vifa1g10531 810 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Vifa1g10531 810 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vifa1g10531 810 SUPERFAMILY RNI-like 287 545 - -
Vifa1g10531 810 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 288 558 - -
Vifa1g10531 810 Gene3D Transferase(Phosphotransferase) domain 1 600 742 - -
Vifa1g10531 810 Pfam Leucine Rich Repeat 223 245 IPR001611 GO:0005515
Vifa1g10531 810 FunFam Probable inactive receptor kinase RLK902 33 191 - -
Vifa1g10531 810 SUPERFAMILY L domain-like 58 358 - -
Vifa1g10531 810 Pfam Protein kinase domain 622 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10531 810 Pfam Protein kinase domain 747 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10531 810 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 190 798 - -
Vifa1g10531 810 SMART LRR_typ_2 412 436 IPR003591 -
Vifa1g10531 810 SMART LRR_typ_2 292 316 IPR003591 -
Vifa1g10531 810 SMART LRR_typ_2 221 245 IPR003591 -
Vifa1g10531 810 ProSiteProfiles Protein kinase domain profile. 619 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10531 810 FunFam Leucine-rich receptor-like protein kinase family protein 192 287 - -
Vifa1g10531 810 SUPERFAMILY Protein kinase-like (PK-like) 599 795 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10531 Vifa-Chr1 1769102268 1769105051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10531 9 807 Receptor kinase-like Gene Family AT1G09970 48.724 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g10531 Pkinase 4.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10531 - - lja:Lj4g3v1120510.2 1046.19