Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10530 ATGAATATTTCTTGGAATTTCAAGCAATACCATATATCAAACATTAACCAGAATGAAATTATTGATGGAATCAAAGCTGAGAACATAATTGGAACAGGATCATCAGGGAATGTTTACAAGGTTGAGCTACAAAGTGGTGAAGCTTTTGCAGTCAAACGCGTGACTTCAAATTCACCTGAGTATGAAGCTGAGGTGGCTACCTTGAGTTCTATAAGGCATATGAATGTGGTGAAGCTGTATTGTAGTATCACAAGTGAAGACAGTAGTTTGCTTGTGTATCCGTTGTTACCAAATGGGAGTTTGTGGGAAAGGTTGCGTGAGGAGGAGACTCGGATGGGGTGGGAGGTTAGGTATCATATTGCATTAGGTGCAGCAAGAGGATTGGCATATTTGCATCATGGTTGTGATAAACCTATTATGCATAGGGATATTAAATCAAGTAACATATTGCTTGATGAGGAATGGAAGCCAAGAATTGCTGATTTTGGACTTGCTAAGATTCTAGACGGAGAAGCTGGTAGTTCGTCTCAAGTCATTACTGGAACCCATGGCTACATGGCTCCTGAGTATGCCCACACTCGTAATGTGACGGAGAAGAGTGATGTTTATAGTTTTGGCGTAGTACTCATGGAGTTAGTGACCGGGAAGAAGCCTTTGGAGCCGGAGTTTGGAGAAAATAGGGATATTGTAAGTTGGGTATACGGTAACACTATGAGCAAAGAAAGTGCACTCGAATTGGTAGATTCTACCATTGCAGAGCCTTTAAGAGAAGAAGCCATTAAGGTGTTGAGAATTGCAATAGAGTGCACGAAACACACTCCATCTTTAAGACCGTCAATGAGAGTGGTTGTTCAAACGTTATTGTTACAGCAAAATAATTCTACCAACTAG 891 0.4085 MNISWNFKQYHISNINQNEIIDGIKAENIIGTGSSGNVYKVELQSGEAFAVKRVTSNSPEYEAEVATLSSIRHMNVVKLYCSITSEDSSLLVYPLLPNGSLWERLREEETRMGWEVRYHIALGAARGLAYLHHGCDKPIMHRDIKSSNILLDEEWKPRIADFGLAKILDGEAGSSSQVITGTHGYMAPEYAHTRNVTEKSDVYSFGVVLMELVTGKKPLEPEFGENRDIVSWVYGNTMSKESALELVDSTIAEPLREEAIKVLRIAIECTKHTPSLRPSMRVVVQTLLLQQNNSTN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10530 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vifa1g10530 296 SMART serkin_6 24 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10530 296 FunFam Leucine-rich repeat receptor-like protein kinase 96 296 - -
Vifa1g10530 296 ProSiteProfiles Protein kinase domain profile. 24 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10530 296 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vifa1g10530 296 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 291 - -
Vifa1g10530 296 Pfam Protein kinase domain 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10530 296 ProSitePatterns Protein kinases ATP-binding region signature. 30 52 IPR017441 GO:0005524
Vifa1g10530 296 CDD STKc_IRAK 30 287 - -
Vifa1g10530 296 Gene3D Transferase(Phosphotransferase) domain 1 96 296 - -
Vifa1g10530 296 SUPERFAMILY Protein kinase-like (PK-like) 10 291 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10530 Vifa-Chr1 1768694781 1768695837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10530 4 287 Receptor kinase-like Gene Family AT1G09970 57.655 9.01e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g10530 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10530 - - gmx:100811489 410.994