Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10508 ATGTACATAAGTGGCGGTTCATCTTCCATGGGAAGGTCTTTCAAGGAGTCTCTTAAACTTCTTGAAGCTGATATTCATCATGCCAATACCTTAGCATCGGATTTTCCTAGGGAATACGATGGCGCCTGCCTTCAGATGAGAATGTCATACAGTCCTGCAGCACACTTGTTTCTGTTTCTGGTACAATGGACAGATTGCAATCTTGCTGGAGCTCTTGGATTACTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACTACAATGTCAACACATGAAAGAAAAGCAAGTATTAGGGAATTCTACGCGGTCATATATCCGTCTTTAATACAACTTGAAAAAGGTGTCACTGATGCGGAAGATAAAAAACAGAAGGTTGTATGCATGGAGAGGTATCGTAGAAGAGACGATGAGGAGCACAAGCAATCCTCAGACATAGACCTTGAACGAGAAGAAGAGTGTGGAATATGCATGGAAATGAATAGTAAGATTGTATTGCCCAACTGCAACCATGCCATGTGCCTCAAATGTTACCATGAATGGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGGGTGAACTCGGGCGATCTCTGGGTATTTACCACTAGTAGAGACATCGTAGACATGGAAACAGTGACAAGGGAGAATCTCATAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCATTCCAGACTCTCTTTTTGACCCTTATGACTCTCACTTAAGATAA 756 0.4153 MYISGGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLIQLEKGVTDAEDKKQKVVCMERYRRRDDEEHKQSSDIDLEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWVFTTSRDIVDMETVTRENLIRLFMYIDKLPLIIPDSLFDPYDSHLR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10508 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 202 IPR013083 -
Vifa1g10508 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Vifa1g10508 251 SUPERFAMILY RING/U-box 148 200 - -
Vifa1g10508 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Vifa1g10508 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Vifa1g10508 251 PANTHER RING FINGER PROTEIN 41, 151 12 249 - -
Vifa1g10508 251 SMART ring_2 155 192 IPR001841 -
Vifa1g10508 251 FunFam RING/U-box superfamily protein 133 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10508 Vifa-Chr1 1759996464 1759999040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10508 144 196 C3H Transcription Factor Family AT5G47610 41.379 2.08e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10508 K25840 - vvi:100244841 461.455