Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g10508 | ATGTACATAAGTGGCGGTTCATCTTCCATGGGAAGGTCTTTCAAGGAGTCTCTTAAACTTCTTGAAGCTGATATTCATCATGCCAATACCTTAGCATCGGATTTTCCTAGGGAATACGATGGCGCCTGCCTTCAGATGAGAATGTCATACAGTCCTGCAGCACACTTGTTTCTGTTTCTGGTACAATGGACAGATTGCAATCTTGCTGGAGCTCTTGGATTACTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACTACAATGTCAACACATGAAAGAAAAGCAAGTATTAGGGAATTCTACGCGGTCATATATCCGTCTTTAATACAACTTGAAAAAGGTGTCACTGATGCGGAAGATAAAAAACAGAAGGTTGTATGCATGGAGAGGTATCGTAGAAGAGACGATGAGGAGCACAAGCAATCCTCAGACATAGACCTTGAACGAGAAGAAGAGTGTGGAATATGCATGGAAATGAATAGTAAGATTGTATTGCCCAACTGCAACCATGCCATGTGCCTCAAATGTTACCATGAATGGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGGGTGAACTCGGGCGATCTCTGGGTATTTACCACTAGTAGAGACATCGTAGACATGGAAACAGTGACAAGGGAGAATCTCATAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCATTCCAGACTCTCTTTTTGACCCTTATGACTCTCACTTAAGATAA | 756 | 0.4153 | MYISGGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLIQLEKGVTDAEDKKQKVVCMERYRRRDDEEHKQSSDIDLEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWVFTTSRDIVDMETVTRENLIRLFMYIDKLPLIIPDSLFDPYDSHLR | 251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g10508 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 202 | IPR013083 | - | |
Vifa1g10508 | 251 | Pfam | Zinc finger, C3HC4 type (RING finger) | 152 | 198 | - | - | |
Vifa1g10508 | 251 | SUPERFAMILY | RING/U-box | 148 | 200 | - | - | |
Vifa1g10508 | 251 | ProSitePatterns | Zinc finger RING-type signature. | 170 | 179 | IPR017907 | - | |
Vifa1g10508 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 193 | IPR001841 | - | |
Vifa1g10508 | 251 | PANTHER | RING FINGER PROTEIN 41, 151 | 12 | 249 | - | - | |
Vifa1g10508 | 251 | SMART | ring_2 | 155 | 192 | IPR001841 | - | |
Vifa1g10508 | 251 | FunFam | RING/U-box superfamily protein | 133 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g10508 | Vifa-Chr1 | 1759996464 | 1759999040 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g10508 | 144 | 196 | C3H Transcription Factor Family | AT5G47610 | 41.379 | 2.08e-06 | 45.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g10508 | K25840 | - | vvi:100244841 | 461.455 |