LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g10498	ATGTCTGACACCGAAAATCACGCCTATCACGGCGCTTCTTCCCCCGACAAGCCAAGTTCCCGGGGATCTGGTCATGAGAGCACGAGGATGAGAAGGAGAGATGGAGGCAGTAAAAATTTTCATGACAACCGTGACCGTCATAGAGATGATAAATACGAGGGTTTTAGAGGAAGAGGCAGATATGACAGTTATAATCGTCAACGTGGACGTGATTATGATAGGCATAATGACTATGATCGTGATAGAGATACAAGACACAGATATGGGGCACATTCAAAGAGATCCAGGAGGGAATCGAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCAGAAGGAAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACTGGTGTAACACCCGCTGTTTCAGTTAATAATGCAGGGCAAATGCCGGGGATTGCTCATACAATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCTTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGACGAGTGTACGTTGGTGGGCTCCCTCCTTTTGCTAATGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGATTGCTATTGGGGGAAATTCTGCCGGATCAGGTGATTCGGTTGTCAATGTCTACATTAACCACGAGAAGAAATTCGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTTCTGTGAGAGTCCGTAGGCCAACTGACTATAACCCTTCGTTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTGCAAACCTCAACTTATCTGCTGTTGGACTTTCTGCAGGTACAATAGGTGGAGCCGAGGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCTCAAATGAGAGAGTTGCTTCAGGCTTTTGGTCCTCTCCGAAATTTTGATATAGTTAGAGATAAAGAAACTGGAAACTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTTAATGGCCTTAAAATGGGAGATAAAACATTGACTGTGAGGCGTGCTACTGTCAGGTTAGCCTTTCTACTGAGGAGTCCATCTTTTTACTGA	1179	0.4529	MSDTENHAYHGASSPDKPSSRGSGHESTRMRRRDGGSKNFHDNRDRHRDDKYEGFRGRGRYDSYNRQRGRDYDRHNDYDRDRDTRHRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPAVSVNNAGQMPGIAHTIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQAIASFFSHVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVSVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGLDRIFVGGLPYYFTEAQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVRLAFLLRSPSFY	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g10498	392	MobiDBLite	consensus disorder prediction	22	88	-	-
	Vifa1g10498	392	FunFam	U2 snRNP auxiliary factor large subunit	177	278	-	-
	Vifa1g10498	392	Gene3D	-	302	381	IPR012677	-
	Vifa1g10498	392	SUPERFAMILY	RNA-binding domain, RBD	303	381	IPR035979	GO:0003676
	Vifa1g10498	392	CDD	RRM1_U2AF65	181	263	-	-
	Vifa1g10498	392	MobiDBLite	consensus disorder prediction	1	130	-	-
	Vifa1g10498	392	Gene3D	-	177	275	IPR012677	-
	Vifa1g10498	392	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	182	265	IPR000504	GO:0003723
	Vifa1g10498	392	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	304	373	IPR000504	GO:0003723
	Vifa1g10498	392	SUPERFAMILY	RNA-binding domain, RBD	182	267	IPR035979	GO:0003676
	Vifa1g10498	392	PANTHER	RNA-BINDING PROTEIN	20	380	-	-
	Vifa1g10498	392	FunFam	U2 snRNP auxiliary factor large subunit	279	384	-	-
	Vifa1g10498	392	NCBIfam	U2 snRNP auxilliary factor, large subunit, splicing factor	21	381	IPR006529	GO:0003723\|GO:0005634\|GO:0006397
	Vifa1g10498	392	CDD	RRM2_U2AF65	302	378	-	-
	Vifa1g10498	392	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	302	380	IPR000504	GO:0003723
	Vifa1g10498	392	SMART	rrm1_1	183	261	IPR000504	GO:0003723
	Vifa1g10498	392	SMART	rrm1_1	303	376	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g10498	Vifa-Chr1	1759648372	1759661286	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g10498	296	378	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.301	1.17e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g10498	K12837		-	psom:113306427	467.233