LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g10497	ATGTCTGACACCGAAAATCACGCCTATCACGGCGCTTCTTCCCCCGACAAGCCAAGTTCCCGGGGATCTGGTCATGAGAGCACGAGGATGAGAAGGAGAGATGGAGGCAGTAAAAATTTTCATGACAACCGTGACCGTCATAGAGATGATAAATACGAGGGTTTTAGAGGAAGAGGCAGATATGACAGTTATAATCGTCAACGTGGACGTGATTATGATAGGCATAATGACTATGATCGTGATAGAGATACAAGACACAGATATGGGGCACATTCAAAGAGATCCAGGAGGGAATCGAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCAGAAGGAAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACTGGTGTAACACCCGCTGTTTCAGGGCAAATGCCGGGGATTGCTCATACAATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCTTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGACGAGTGTACGTTGGTGGGCTCCCTCCTTTTGCTAATGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGATTGCTATTGGGGGAAATTCTGCCGGATCAGGTGATTCGGTTGTCAATGTCTACATTAACCACGAGAAGAAATTCGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTTCTGTGAGAGTCCGTAGGCCAACTGACTATAACCCTTCGTTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTGCAAACCTCAACTTATCTGCTGTTGGACTTTCTGCAGGTACAATAGGTGGAGCCGAGGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCTCAAATGAGAGAGTTGCTTCAGGCTTTTGGTCCTCTCCGAAATTTTGATATAGTTAGAGATAAAGAAACTGGAAACTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTTAATGGCCTTAAAATGGGAGATAAAACATTGACTGTGAGGCGTGCTACTGTCAGGTTAGCCTTTCTACTGAGGAGTCCATCTTTTTACTGA	1167	0.455	MSDTENHAYHGASSPDKPSSRGSGHESTRMRRRDGGSKNFHDNRDRHRDDKYEGFRGRGRYDSYNRQRGRDYDRHNDYDRDRDTRHRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPAVSGQMPGIAHTIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQAIASFFSHVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVSVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGLDRIFVGGLPYYFTEAQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVRLAFLLRSPSFY	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g10497	388	MobiDBLite	consensus disorder prediction	1	133	-	-
	Vifa1g10497	388	PANTHER	RNA-BINDING PROTEIN	20	376	-	-
	Vifa1g10497	388	MobiDBLite	consensus disorder prediction	22	88	-	-
	Vifa1g10497	388	SUPERFAMILY	RNA-binding domain, RBD	299	377	IPR035979	GO:0003676
	Vifa1g10497	388	NCBIfam	U2 snRNP auxilliary factor, large subunit, splicing factor	21	377	IPR006529	GO:0003723\|GO:0005634\|GO:0006397
	Vifa1g10497	388	CDD	RRM1_U2AF65	177	259	-	-
	Vifa1g10497	388	FunFam	U2 snRNP auxiliary factor large subunit	173	274	-	-
	Vifa1g10497	388	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	300	369	IPR000504	GO:0003723
	Vifa1g10497	388	SMART	rrm1_1	299	372	IPR000504	GO:0003723
	Vifa1g10497	388	SMART	rrm1_1	179	257	IPR000504	GO:0003723
	Vifa1g10497	388	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	298	376	IPR000504	GO:0003723
	Vifa1g10497	388	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	178	261	IPR000504	GO:0003723
	Vifa1g10497	388	CDD	RRM2_U2AF65	298	374	-	-
	Vifa1g10497	388	SUPERFAMILY	RNA-binding domain, RBD	178	263	IPR035979	GO:0003676
	Vifa1g10497	388	Gene3D	-	173	271	IPR012677	-
	Vifa1g10497	388	FunFam	U2 snRNP auxiliary factor large subunit	275	380	-	-
	Vifa1g10497	388	Gene3D	-	298	377	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g10497	Vifa-Chr1	1759648372	1759661286	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g10497	292	374	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.301	1.05e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g10497	K12837		-	psom:113306427	468.003