Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10489 ATGAGGTGTAGTAGCTGTTTTAGAACATTGTCTACAAAGAAGGAAAAACAACCATCTAATTATATTTCCACTGAAATTGAAGGCTATTCTTTGGATAATCTTAAGCATTTTTCTGATAAAGAATTGAGATTAGCAACTGATAATTATCATTTAAGCAATAAGATTGGAAGAGGAGGTTTTGGAACTGTTTACAAGGGGACACTAAAAAATGGAAGAAAGATAGCAGTGAAGCCTCTTTCTGTTGGATCAAAGCAGGGAGTTCGTGAATTTTTGACAGAAATTACAACCTTATCAAAAGTTAAACATTCAAACCTTGTTGAATTGGTTGGATTCTGCATTCAAGGGCCGAATCGTACTGTAGTTTACGAGTATGTCGAAAATGGCAACCTTCATACCGCATTACTCAGCAAAAAGAGTTCAAGCATCAAACTAGAGTGGAGAGAAAGATCTTCTATTTGCGTCGGTACCGCGAAGGGTCTCGCATATCTTCATGAAGAACTTGCACAACATATTGTACATAGAGACATTAAAGCTAGTAATGTGCTGCTTGACAAAGATTTTAGTCCCAAAATTGGTGATTTTGGAATGGCCAAATTATTTCCAGATGATATTACTCATATCAGCACGAGAATCGCCGGAACAACTGGTTACTTAGCACCGGAATATGCATTAGGTGGACAGTTAACCAAGAAGGCTGATGTATACAGCTTTGGAGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGCTCAAAGACAAATTGGGATGGATCACATGAATTCCTCTTAGAATGGGCATGGCAACTACATGAAGACAAGAAATGGTTGGAGTTAGTAGATCAAGAGATGGAAGAATATCCGAAGAAAGATGTAATCAAGTACATTAAGGTTGCTCTTTTCTGCACACAAGCAGCCGCGAAAAGAAGGCCATTGATGACACAGGTTGTTGATATGCTCACTAAGGAAATTCAGCTCAATGAGAAGCAACTAACAGCACCAGGATTGTTCAATTATGATGTTGGAGAATCCTCTCAAAAGAAATCAAATCCTGAATCTGTAGTTTATCACACAAGTTCTACTCAGGCTAGTATTACTCAGGTCACTCCAAGGTGA 1113 0.3792 MRCSSCFRTLSTKKEKQPSNYISTEIEGYSLDNLKHFSDKELRLATDNYHLSNKIGRGGFGTVYKGTLKNGRKIAVKPLSVGSKQGVREFLTEITTLSKVKHSNLVELVGFCIQGPNRTVVYEYVENGNLHTALLSKKSSSIKLEWRERSSICVGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFSPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSKTNWDGSHEFLLEWAWQLHEDKKWLELVDQEMEEYPKKDVIKYIKVALFCTQAAAKRRPLMTQVVDMLTKEIQLNEKQLTAPGLFNYDVGESSQKKSNPESVVYHTSSTQASITQVTPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10489 370 Gene3D Phosphorylase Kinase; domain 1 20 124 - -
Vifa1g10489 370 MobiDBLite consensus disorder prediction 341 370 - -
Vifa1g10489 370 Gene3D Transferase(Phosphotransferase) domain 1 125 334 - -
Vifa1g10489 370 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 331 - -
Vifa1g10489 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vifa1g10489 370 ProSiteProfiles Protein kinase domain profile. 49 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10489 370 PIRSF TyrPK_CSF1-R 285 368 - -
Vifa1g10489 370 PIRSF TyrPK_CSF1-R 38 154 - -
Vifa1g10489 370 PIRSF TyrPK_CSF1-R 133 251 - -
Vifa1g10489 370 SMART serkin_6 49 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10489 370 SUPERFAMILY Protein kinase-like (PK-like) 23 319 IPR011009 -
Vifa1g10489 370 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 23 124 - -
Vifa1g10489 370 CDD STKc_IRAK 55 321 - -
Vifa1g10489 370 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Vifa1g10489 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 350 - -
Vifa1g10489 370 Pfam Protein tyrosine and serine/threonine kinase 50 319 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10489 Vifa-Chr1 1759034011 1759036181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10489 10 334 Receptor kinase-like Gene Family AT1G56120 48.328 5.30e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g10489 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10489 - - mtr:11430773 651.744