Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10474 ATGGAATTTCAGCAATGTTTTCCTCATGACTTGAAAAGCATTCCCACTTCAGTATCAGAAGCAGAAAACTACAACGGTTGTTTCGACTGCAACATCTGCCTAGACTTTGCGAACGAACCAGTAGTCACGCATTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTAATGACTCTCTTGGAGTCGACGAACATCCGCAGTGTCCTGTATGCAAAGATAACATATCACATACAACTGTGATACCGTTGTATGGCCGCGGCGGCCAGAATGAGAAATCATCATGTTTTAATGATAATTTTGTACCACCGAGACCATCTGCCTCAGGTGCTCAACCTCTTTTAAATTTGGCAACCGCGTCTCAAAGCGATCATCAGCAGCGGCTGCTTCCGTATCGTAATCCTTATCGTGGTCAATATTACCATCAAGAGGATGGTGTTACTTCACAAATGCTCAGTCTTGGTGCTTCTGTGACCTCTCACCAGCATCCCGTGGTTGAGATGGTTTTTTCTGTAGTATTCGGAAGTTCACGGAATTCTTATCAGACAATGCGGAGTAATGGCCCTAGATTAAGTAGGCAGGAGTTGCATACTGATAAGTTTTTGAATAGAATTTCAAATTTTCTGTTCTGTTGCCTTTTTGTATGTCTTATTGTATTCTAA 678 0.4307 MEFQQCFPHDLKSIPTSVSEAENYNGCFDCNICLDFANEPVVTHCGHLYCWPCIYKWLHVQSNDSLGVDEHPQCPVCKDNISHTTVIPLYGRGGQNEKSSCFNDNFVPPRPSASGAQPLLNLATASQSDHQQRLLPYRNPYRGQYYHQEDGVTSQMLSLGASVTSHQHPVVEMVFSVVFGSSRNSYQTMRSNGPRLSRQELHTDKFLNRISNFLFCCLFVCLIVF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10474 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 91 IPR013083 -
Vifa1g10474 225 SMART ring_2 30 77 IPR001841 -
Vifa1g10474 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 222 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa1g10474 225 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
Vifa1g10474 225 SUPERFAMILY RING/U-box 25 90 - -
Vifa1g10474 225 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Vifa1g10474 225 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10474 Vifa-Chr1 1756180638 1756181315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10474 10 211 C3H Transcription Factor Family AT4G27470 38.249 5.01e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10474 K10666 - gmx:100807061 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10474 1 1756180638 1756181315 Vifa1g10474 1 1756180638 1756181315 ECH