LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g10465	ATGGTTGGACACAAAAACTCTCACCATCTTCTTCTTCTTCTTCTCTCATCAACTTTCTTCCTTCTCTTCACCTCAATCTCCGCCATTGATTTCATCTTCAACACTTTCAACTCATCAACCATCTCACTCTTCGGAAACTCCACAATCGATTCTCAAATCCTAACACTCGCACATCACCAAACTTTCTCTATAGGTCGTGCTCTTTACCCTCATAAAATCCCAACTAAAAACTCTTCATCTTCTCCTTCTCATGTCTACCCTTTCTCCACCTCCTTCATCTTCTCCATGGTACCTTTCCAACACACACTTCCAGGCCATGGTTTAGTTTTCATCTTCACACCTCTCAAAGGAATCCAAGGAACAAGTTCAGCTCAACACCTTGGTCTTTTTAACCTTACTAATAACGGAGATTCAAATAACCATGTTTTCGGTGTTGAATTTGATGTTTTCATGAACCAGGAGTTTGAAGACATCAACGACAACCATGTCGGAATCGACATAAATTCTCTTACTTCTGTTGTTTCACATGATGCTGGGTTTTGGCTTGATGATGCAAAAAGTGAAAAAGATCAGATTTTTAAGAAACTGGTGTTGAATAATGGTGAGAATTATCAAGTTTGGATTGATTATGAAGATTCTTTGATTAATGTTACTATGGCCAAATCGGGTATGAAGAAACCTGTTAAGCCTTTGTTGAATGTTTCTATCAATTTATCTCAAGTTTTTGAAGATGAGATGTTTGTTGGATTTACTAGCTCAACTGGCCAATTAGTTCAAAGTCATAAAATCTTAGCTTGGAGTTTTAGCAATACAAATTTTTCATTTAGTGATGAGATTATTACTATTGGTTTACCCTCTTTTGTTCTTCCAAAAGATTCGATTTTTGAGTCGAAACGATTTGTTGCAGGGTTTAGTGTAGGAGTTTTCTTTGTTGTTTGTGTTTTGGTTTTGTTGGTGTTGTTTTTGATTCAGGAGAAGAGAAAGAGAGAGAAGAAGAGAAGTGAAATGGAAGATTGGGAGATGGAGTATTGGCCACATAGAATGTCATATGAAGAAGTTAAAGCTTCGACGAAAGATTTCTCTGAGGAGAATGTGATTGGAATTGGTGGAAATGGAAAGGTCTATAGAGGTGTTTTAAGAGGAGTAGTGATTGCTGTGAAGAATATTTCTCATGAGAATAATGGTGTGAGAGAGTTTCTTGCAGAAGTTTCAACTCTTGGAAGGTTGAAGCAAAGGAATTTAGTAGGGTTAAGAGGTTGGTGCAAGAAAAATTCTGGAAATTTCTTGTTAGTTTATGAGTATATGGAAAATGGAAGTTTAGATAAAAGAGTGTTTTGTGATTTTGATAATGATGATGAGAGCAAGATGTTAAAATTTGAAGATAGAATAAGGATTATTAAAGATGTGGCTTATGCTGTTTTGTATTTGCATGAAGGATGGGAAGTGAAAGTGGTGCATAGGGATATCAAGGCTAGCAATGTTTTACTTGATAAGGATATGAATGGAAAGTTAGGTGATTTTGGTTTAGCTAGGCTGCAAAACCATGGTCAAGTAGCTAGAACGACTAAGTTGGTCGGAACGGTCGGTTACATGGCTCCTGAAGTGATCAAAACGGGCCGAGCTTCGACTCATACCGATGTTTACATGTTCGGTATCTTGATTTTAGAGGTCATGTGTGGGAGGAGACCGTTAGAAGAAGGTAAACCGGGTTTGGTTGAGTTTGTTTGGAAACTTTTGGAACAAGGGGAACTTGTGAGTGCTCTTGATGAGAGGCTAAGGGCTAAAGGTGAGTTTAGTTTGCAGGAATTGGAGAGAGTGTTGCATTTGGGTTTGTTGTGTGCTTATCCTGAACCTAAGTCTAGGCCAAGTATGAGACAAGTGGTGAATGTTTTAGAAGGGATGAGTGAGGGAGGTGAAGAGTCAGAGGATATGGATAGTTGTTTGTTGCAACAGTTGAAATCAAGAGATATTTTGTCTGAGTATTCGTTGTATTTTGGTTATGCATCACACCCAACTTTTCATGATGTTCCTCAATTTTCCTCAACATCTGTTACTTGGTCTGGATCTTTAGTTGAGGGTAGGTGA	2085	0.3803	MVGHKNSHHLLLLLLSSTFFLLFTSISAIDFIFNTFNSSTISLFGNSTIDSQILTLAHHQTFSIGRALYPHKIPTKNSSSSPSHVYPFSTSFIFSMVPFQHTLPGHGLVFIFTPLKGIQGTSSAQHLGLFNLTNNGDSNNHVFGVEFDVFMNQEFEDINDNHVGIDINSLTSVVSHDAGFWLDDAKSEKDQIFKKLVLNNGENYQVWIDYEDSLINVTMAKSGMKKPVKPLLNVSINLSQVFEDEMFVGFTSSTGQLVQSHKILAWSFSNTNFSFSDEIITIGLPSFVLPKDSIFESKRFVAGFSVGVFFVVCVLVLLVLFLIQEKRKREKKRSEMEDWEMEYWPHRMSYEEVKASTKDFSEENVIGIGGNGKVYRGVLRGVVIAVKNISHENNGVREFLAEVSTLGRLKQRNLVGLRGWCKKNSGNFLLVYEYMENGSLDKRVFCDFDNDDESKMLKFEDRIRIIKDVAYAVLYLHEGWEVKVVHRDIKASNVLLDKDMNGKLGDFGLARLQNHGQVARTTKLVGTVGYMAPEVIKTGRASTHTDVYMFGILILEVMCGRRPLEEGKPGLVEFVWKLLEQGELVSALDERLRAKGEFSLQELERVLHLGLLCAYPEPKSRPSMRQVVNVLEGMSEGGEESEDMDSCLLQQLKSRDILSEYSLYFGYASHPTFHDVPQFSSTSVTWSGSLVEGR	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g10465	694	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	280	IPR013320	-
	Vifa1g10465	694	SMART	serkin_6	360	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g10465	694	Gene3D	Transferase(Phosphotransferase) domain 1	435	654	-	-
	Vifa1g10465	694	SUPERFAMILY	Protein kinase-like (PK-like)	334	632	IPR011009	-
	Vifa1g10465	694	Pfam	Legume lectin domain	29	273	IPR001220	GO:0030246
	Vifa1g10465	694	Gene3D	Phosphorylase Kinase; domain 1	321	434	-	-
	Vifa1g10465	694	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	322	434	-	-
	Vifa1g10465	694	FunFam	L-type lectin-domain containing receptor kinase S.4	27	276	-	-
	Vifa1g10465	694	ProSiteProfiles	Protein kinase domain profile.	360	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g10465	694	CDD	lectin_legume_LecRK_Arcelin_ConA	29	271	IPR001220	GO:0030246
	Vifa1g10465	694	Coils	Coil	322	342	-	-
	Vifa1g10465	694	ProSitePatterns	Protein kinases ATP-binding region signature.	366	387	IPR017441	GO:0005524
	Vifa1g10465	694	CDD	STKc_IRAK	366	634	-	-
	Vifa1g10465	694	Pfam	Protein kinase domain	361	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g10465	694	PANTHER	-	42	635	-	-
	Vifa1g10465	694	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	484	496	IPR008271	GO:0004672\|GO:0006468
	Vifa1g10465	694	Gene3D	-	27	281	-	-
	Vifa1g10465	694	FunFam	L-type lectin-domain containing receptor kinase S.4	435	644	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g10465	Vifa-Chr1	1753078793	1753080877	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g10465	26	582	Receptor kinase-like Gene Family	AT4G04960	62.633	0.0	693

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vifa1g10465		Pkinase	2.7e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g10465	-		-	gmx:100804391	1001.89