Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10462 ATGGAGGAAAATACTAGTTCATGGTTACAGAGGGCGAAATATTCTCATACCGTGTGTCATCGCTTGGATACATCGAGGATGAAATCGACTCCGTTCAACGCAGAACAGGAACAAAATTCAAGATTTTCTTCGTATGTTAAGAGGAATCTTTTAACCAACAAGCAGAGATCTCTGTCGCCATTGCCCATAAATTCCATTTCCGATGTCTTTAGAGAAGCCAAACATGAACGGAAGAGGTTCTCGACGCCAGGTCCTAGTAGGGACAAGACGATTATGGGAAAGGTGTCGTCAAGCAAGGAATCTCGGGAACTACCTAAGGTGTCGAGTTCGAAATCACCTTTTACGAGTCCGAACAGGCAAAAGATGCCGAAGGGCCTTAGGAAGGATTCTTCATGGACTAAGCTTTTTGAAAGCGGCGGCGGTGGTGGAAAGGTTACTGCTTTGGAAACAGCTGAGGAATGGACTATTGACATGTCGAAACTGTTTCTTGGCCATAAGTTCGCTCATGGCGCTCATAGTAGGCTTTATCATGGTGTATATAAAGAGGAGGTTGTAGCTGTTAAAATGATTAGGGTACCTGATGACGACGATAACGGAGAGTTGGCTGCTCGATTAGAGGATCAGTTTGTTAGAGAAGTCACCCTTTTATCTCGCCTTCATCATCGAAATGTTATAAAGTTCATAGCTGCGAGCAGCAATCCCCCGGTTTATTGTATTATCACAGAATATATATCCGAAGGCTCCTTGAGGGCTTATTTGCATAAGCTGGAGCGCAAAACTATTTCTCATGAGAAGCTAATCGCTTTCGCTTTGGATATCGCTCGTGGAATGCAGTATATACACTCTCAAGGTGTCATTCATAGGGATCTTAAACCTGAGAACGTCCTTATTGATGAAGACTCTCGTCTTATACTTGCTGATTTCGGCATTGCTTGTGAGGAGGCCGTATGCGACCTATTGGCTGATGATCCTGGAACATATCGTTGGATGGCACCTGAAATGATCAAAAGAAAATCCTATGGGAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTATGGGAATTGTTGACCGGAACAATTCCGTACGAGGATATGAATCCAATCCAGGCTGCTTTTGCTGTTGTCAATAAGAAATTAAGGCCGATTATTCCTCCAAACTGCCCACCTGCAATGCAAGCTTTAATCGAGCAATGCTGGTCGCTGCAACCAGATAAGAGGCCTGATTTCTGGCAGATTGTCAAGGTATTAGAGCAGTTTCAATCTTCCCTTGCCCGTGACGGAACGCTAACTCTAGTGCAGAATCCTCGTTGCCAAGATCAAAAGAAAGGGCTTCGTCATTGGATTCAAAAGCTTGGTCCAGTTCATCAAAATAGCTACACCGGCCCTAAGCCTAAGCCGAAATTTACATGA 1413 0.4409 MEENTSSWLQRAKYSHTVCHRLDTSRMKSTPFNAEQEQNSRFSSYVKRNLLTNKQRSLSPLPINSISDVFREAKHERKRFSTPGPSRDKTIMGKVSSSKESRELPKVSSSKSPFTSPNRQKMPKGLRKDSSWTKLFESGGGGGKVTALETAEEWTIDMSKLFLGHKFAHGAHSRLYHGVYKEEVVAVKMIRVPDDDDNGELAARLEDQFVREVTLLSRLHHRNVIKFIAASSNPPVYCIITEYISEGSLRAYLHKLERKTISHEKLIAFALDIARGMQYIHSQGVIHRDLKPENVLIDEDSRLILADFGIACEEAVCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWELLTGTIPYEDMNPIQAAFAVVNKKLRPIIPPNCPPAMQALIEQCWSLQPDKRPDFWQIVKVLEQFQSSLARDGTLTLVQNPRCQDQKKGLRHWIQKLGPVHQNSYTGPKPKPKFT 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10462 470 Gene3D Transferase(Phosphotransferase) domain 1 246 452 - -
Vifa1g10462 470 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672|GO:0006468
Vifa1g10462 470 PRINTS Tyrosine kinase catalytic domain signature 279 297 IPR001245 GO:0004672|GO:0006468
Vifa1g10462 470 PRINTS Tyrosine kinase catalytic domain signature 325 335 IPR001245 GO:0004672|GO:0006468
Vifa1g10462 470 PRINTS Tyrosine kinase catalytic domain signature 241 254 IPR001245 GO:0004672|GO:0006468
Vifa1g10462 470 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672|GO:0006468
Vifa1g10462 470 FunFam Kinase suppressor of Ras 1 150 244 - -
Vifa1g10462 470 FunFam serine/threonine-protein kinase HT1 246 439 - -
Vifa1g10462 470 CDD STKc_MAP3K-like 168 417 - -
Vifa1g10462 470 ProSiteProfiles Protein kinase domain profile. 161 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10462 470 SUPERFAMILY Protein kinase-like (PK-like) 148 417 IPR011009 -
Vifa1g10462 470 MobiDBLite consensus disorder prediction 74 132 - -
Vifa1g10462 470 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 99 424 - -
Vifa1g10462 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Vifa1g10462 470 Pfam Protein tyrosine and serine/threonine kinase 163 417 IPR001245 GO:0004672|GO:0006468
Vifa1g10462 470 Gene3D Phosphorylase Kinase; domain 1 149 245 - -
Vifa1g10462 470 SMART serkin_6 161 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10462 Vifa-Chr1 1751790786 1751792690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10462 1 470 MAP Kinase Kinase Kinase AT5G58950 53.788 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g10462 PK_Tyr_Ser-Thr 1.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10462 - - tpra:123908135 763.837