Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10461 ATGAAAACTCTCTACCACAAACTCAATTCAGTTCTTCCTCATCAAACCTCAAAGGCTATTTCGATGCCGGATCGGTTAGAAGAAGCAACAAATTACATAAAGAAGTTACAGATAAATTTGGAGAAAATGAAGGAAAAGAAGTTTCTACTAGAAACTACAAGGCCAAATGTGAATATGAAAAGAAGGGAGAAGTTGATGTTAAAATCTCCAAAAATTGAGATCCAACAAATAGGTTTAACCTTAGAGGTTGTTCTAATAACTGGATTGGATTCTCAGTTTTTGTTCAATGAAACCATTAGAATTCTCAATGAAGAAGGAGTTGATATTGTTAATGCTAGCTATAAAGTCAATGAAGATACTGTTATCCATTCAATACATTGTCAGGTAGAAGAAGAATTTGGCAATGAAACTGCAAGAATATCTGAGAGATTGAACAAGGTTATTGTTGGCTCCTAA 456 0.3355 MKTLYHKLNSVLPHQTSKAISMPDRLEEATNYIKKLQINLEKMKEKKFLLETTRPNVNMKRREKLMLKSPKIEIQQIGLTLEVVLITGLDSQFLFNETIRILNEEGVDIVNASYKVNEDTVIHSIHCQVEEEFGNETARISERLNKVIVGS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10461 151 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 146 - -
Vifa1g10461 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 52 IPR036638 GO:0046983
Vifa1g10461 151 Coils Coil 26 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10461 Vifa-Chr1 1751596606 1751597227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10461 1 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.250 7.30e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10461 - - gmx:100784418 182.185